Gene name: RPC40
Reference locus (S288C): YPR110C
Gene biotype: protein_coding
Description: RNA polymerase subunit AC40; common to RNA polymerase I and III; predominant determinant targeting Ty1 integration upstream of Pol III-transcribed genes
Top 10 interactors (score): RPC37 (0.999); RPC34 (0.999); RPC82 (0.999); RPO31 (0.999); RPA12 (0.999); RPC53 (0.999); RPA49 (0.999); RPA135 (0.999); RPA190 (0.999); RPB5 (0.999); RET1 (0.999); RPO26 (0.999); RPB8 (0.999); RPC10 (0.999); RPC31 (0.999); RPB10 (0.999); RPC25 (0.999); RPC19 (0.999); RPA43 (0.999); RPC17 (0.999)
Homologues (species, bitscore): POLR1C (Homo sapiens, 315.1); Polr1c (Mus musculus, 319.3); polr1c (Danio rerio, 342.4); polr1c (Xenopus tropicalis, 323.6); CG3756 (Drosophila melanogaster, 287.7); H43I07.2 (Caenorhabditis elegans, 254.2); RPAC43 (Arabidopsis thaliana, 230.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:717660-718667:- | gene-YPR110C_AKU4011 | rna-NM_001184207.1_AKU4011 | cds-NP_015435.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:179173-180180:+ | gene-YPR110C_BG1 | rna-NM_001184207.1_BG1 | cds-NP_015435.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:796770-797777:- | gene-YPR110C_Bruggeman | rna-NM_001184207.1_Bruggeman | cds-NP_015435.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:839971-840978:- | gene-YPR110C_CAT1 | rna-NM_001184207.1_CAT1 | cds-NP_015435.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:721917-722924:- | gene-YPR110C_CBS1585 | rna-NM_001184207.1_CBS1585 | cds-NP_015435.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:736214-737221:- | gene-YPR110C_CBS436 | rna-NM_001184207.1_CBS436 | cds-NP_015435.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:724640-725647:- | gene-YPR110C_CBS6412 | rna-NM_001184207.1_CBS6412 | cds-NP_015435.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:719364-720371:- | gene-YPR110C_CBS6413 | rna-NM_001184207.1_CBS6413 | cds-NP_015435.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:745813-746820:- | gene-YPR110C_CENPK1137D | rna-NM_001184207.1_CENPK1137D | cds-NP_015435.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:1044274-1045281:- | gene-YPR110C_EthanolRed | rna-NM_001184207.1_EthanolRed | cds-NP_015435.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:723821-724828:- | gene-YPR110C_FaliES1 | rna-NM_001184207.1_FaliES1 | cds-NP_015435.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000436.1:14583-15590:- | gene-YPR110C_JAY291 | rna-NM_001184207.1_JAY291 | cds-NP_015435.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:736927-737934:- | gene-YPR110C_MUCL30387 | rna-NM_001184207.1_MUCL30387 | cds-NP_015435.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:735620-736627:- | gene-YPR110C_MUCL30388 | rna-NM_001184207.1_MUCL30388 | cds-NP_015435.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:714424-715431:- | gene-YPR110C_MUCL39482 | rna-NM_001184207.1_MUCL39482 | cds-NP_015435.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:777965-778972:- | gene-YPR110C_MUCL42920 | rna-NM_001184207.1_MUCL42920 | cds-NP_015435.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:745811-746818:- | gene-YPR110C_NCIM3186 | rna-NM_001184207.1_NCIM3186 | cds-NP_015435.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:723018-724025:- | gene-YPR110C_NCYC1407 | rna-NM_001184207.1_NCYC1407 | cds-NP_015435.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:729258-730265:- | gene-YPR110C_PE2H3 | rna-NM_001184207.1_PE2H3 | cds-NP_015435.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:728906-729913:- | gene-YPR110C_PE2H4 | rna-NM_001184207.1_PE2H4 | cds-NP_015435.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:745828-746835:- | gene-YPR110C_S288C | rna-NM_001184207.1_S288C | cds-NP_015435.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000028.1:43943-44950:- | gene-YPR110C_SA1 | rna-NM_001184207.1_SA1 | cds-NP_015435.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:723266-724273:- | gene-YPR110C_ThermosaccDry | rna-NM_001184207.1_ThermosaccDry | cds-NP_015435.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:739925-740932:- | gene-YPR110C_VR1 | rna-NM_001184207.1_VR1 | cds-NP_015435.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:722316-723323:- | gene-YPR110C_ZTW1 | rna-NM_001184207.1_ZTW1 | cds-NP_015435.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:723286-724293:- | gene-YPR110C_Sparadoxus | rna-NM_001184207.1_Sparadoxus | cds-NP_015435.1_Sparadoxus | 92.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |