Gene name: RPC34
Reference locus (S288C): YNR003C
Gene biotype: protein_coding
Description: RNA polymerase III subunit C34; interacts with TFIIIB70 and is a key determinant in pol III recruitment by the preinitiation complex; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family
Top 10 interactors (score): RPC53 (0.999); RPO26 (0.999); RET1 (0.999); RPC11 (0.999); RPO31 (0.999); RPC17 (0.999); RPC82 (0.999); RPC25 (0.999); RPC19 (0.999); RPC37 (0.999); RPB8 (0.999); RPC31 (0.999); RPB5 (0.999); RPC40 (0.999); BRF1 (0.998); RPB10 (0.996); RPC10 (0.996); BDP1 (0.993); RPA135 (0.993); SPT15 (0.991)
Homologues (species, bitscore): POLR3F (Homo sapiens, 111.3); Polr3f (Mus musculus, 110.9); polr3f (Danio rerio, 107.1); polr3f (Xenopus tropicalis, 106.3); CG5380 (Drosophila melanogaster, 108.6); W09C3.4 (Caenorhabditis elegans, 100.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:617927-618880:- | gene-YNR003C_AKU4011 | rna-NM_001183180.1_AKU4011 | cds-NP_014400.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:525782-526735:- | gene-YNR003C_BG1 | rna-NM_001183180.1_BG1 | cds-NP_014400.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:635419-636372:- | gene-YNR003C_Bruggeman | rna-NM_001183180.1_Bruggeman | cds-NP_014400.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:669645-670598:- | gene-YNR003C_CAT1 | rna-NM_001183180.1_CAT1 | cds-NP_014400.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:623723-624676:- | gene-YNR003C_CBS1585 | rna-NM_001183180.1_CBS1585 | cds-NP_014400.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:685418-686371:- | gene-YNR003C_CBS436 | rna-NM_001183180.1_CBS436 | cds-NP_014400.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:613289-614242:- | gene-YNR003C_CBS6412 | rna-NM_001183180.1_CBS6412 | cds-NP_014400.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:614617-615570:- | gene-YNR003C_CBS6413 | rna-NM_001183180.1_CBS6413 | cds-NP_014400.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:627995-628948:- | gene-YNR003C_CENPK1137D | rna-NM_001183180.1_CENPK1137D | cds-NP_014400.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:619848-620801:- | gene-YNR003C_EthanolRed | rna-NM_001183180.1_EthanolRed | cds-NP_014400.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:610866-611819:- | gene-YNR003C_FaliES1 | rna-NM_001183180.1_FaliES1 | cds-NP_014400.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000037.1:90924-91877:+ | gene-YNR003C_JAY291 | rna-NM_001183180.1_JAY291 | cds-NP_014400.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:633172-634125:- | gene-YNR003C_MUCL30387 | rna-NM_001183180.1_MUCL30387 | cds-NP_014400.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:674005-674958:- | gene-YNR003C_MUCL30388 | rna-NM_001183180.1_MUCL30388 | cds-NP_014400.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:615231-616184:- | gene-YNR003C_MUCL39482 | rna-NM_001183180.1_MUCL39482 | cds-NP_014400.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:619414-620367:- | gene-YNR003C_MUCL42920 | rna-NM_001183180.1_MUCL42920 | cds-NP_014400.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:634313-635266:- | gene-YNR003C_NCIM3186 | rna-NM_001183180.1_NCIM3186 | cds-NP_014400.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:617733-618686:- | gene-YNR003C_NCYC1407 | rna-NM_001183180.1_NCYC1407 | cds-NP_014400.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:618823-619776:- | gene-YNR003C_PE2H3 | rna-NM_001183180.1_PE2H3 | cds-NP_014400.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:620141-621094:- | gene-YNR003C_PE2H4 | rna-NM_001183180.1_PE2H4 | cds-NP_014400.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:634344-635297:- | gene-YNR003C_S288C | rna-NM_001183180.1_S288C | cds-NP_014400.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000068.1:32048-33001:- | gene-YNR003C_SA1 | rna-NM_001183180.1_SA1 | cds-NP_014400.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:611206-612159:- | gene-YNR003C_ThermosaccDry | rna-NM_001183180.1_ThermosaccDry | cds-NP_014400.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:653168-654121:- | gene-YNR003C_VR1 | rna-NM_001183180.1_VR1 | cds-NP_014400.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:520115-521068:- | gene-YNR003C_ZTW1 | rna-NM_001183180.1_ZTW1 | cds-NP_014400.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:625222-626175:- | gene-YNR003C_Sparadoxus | rna-NM_001183180.1_Sparadoxus | cds-NP_014400.1_Sparadoxus | 92.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |