Gene name: RPC25
Reference locus (S288C): YKL144C
Gene biotype: protein_coding
Description: RNA polymerase III subunit C25; required for transcription initiation; forms a heterodimer with Rpc17p; paralog of Rpb7p
Top 10 interactors (score): RPC53 (0.999); RPO31 (0.999); RPC34 (0.999); RPC82 (0.999); RPB5 (0.999); RPC40 (0.999); RPC37 (0.999); RET1 (0.999); RPO26 (0.999); RPC17 (0.999); RPC19 (0.999); RPB10 (0.999); RPB8 (0.999); RPC10 (0.999); RPC11 (0.998); RPC31 (0.997); RPA43 (0.987); RPB4 (0.981); BDP1 (0.969); BRF1 (0.959)
Homologues (species, bitscore): POLR3H (Homo sapiens, 173.7); Polr3h (Mus musculus, 174.1); polr3h (Danio rerio, 176.4); polr3h (Xenopus tropicalis, 171.8); CG7339 (Drosophila melanogaster, 171.4); ZK856.10 (Caenorhabditis elegans, 122.5); AT1G06790 (Arabidopsis thaliana, 114.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:162721-163359:- | gene-YKL144C_AKU4011 | rna-NM_001179710.1_AKU4011 | cds-NP_012778.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000030.1:139853-140491:- | gene-YKL144C_BG1 | rna-NM_001179710.1_BG1 | cds-NP_012778.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:180382-181020:- | gene-YKL144C_Bruggeman | rna-NM_001179710.1_Bruggeman | cds-NP_012778.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:175707-176345:- | gene-YKL144C_CAT1 | rna-NM_001179710.1_CAT1 | cds-NP_012778.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:174952-175590:- | gene-YKL144C_CBS1585 | rna-NM_001179710.1_CBS1585 | cds-NP_012778.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:173552-174190:- | gene-YKL144C_CBS436 | rna-NM_001179710.1_CBS436 | cds-NP_012778.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:159966-160604:- | gene-YKL144C_CBS6412 | rna-NM_001179710.1_CBS6412 | cds-NP_012778.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:175416-176054:- | gene-YKL144C_CBS6413 | rna-NM_001179710.1_CBS6413 | cds-NP_012778.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:175487-176125:- | gene-YKL144C_CENPK1137D | rna-NM_001179710.1_CENPK1137D | cds-NP_012778.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:173455-174093:- | gene-YKL144C_EthanolRed | rna-NM_001179710.1_EthanolRed | cds-NP_012778.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:174267-174905:- | gene-YKL144C_FaliES1 | rna-NM_001179710.1_FaliES1 | cds-NP_012778.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000198.1:10980-11618:- | gene-YKL144C_JAY291 | rna-NM_001179710.1_JAY291 | cds-NP_012778.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:182479-183117:- | gene-YKL144C_MUCL30387 | rna-NM_001179710.1_MUCL30387 | cds-NP_012778.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:176831-177469:- | gene-YKL144C_MUCL30388 | rna-NM_001179710.1_MUCL30388 | cds-NP_012778.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:174753-175391:- | gene-YKL144C_MUCL39482 | rna-NM_001179710.1_MUCL39482 | cds-NP_012778.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:179142-179780:- | gene-YKL144C_MUCL42920 | rna-NM_001179710.1_MUCL42920 | cds-NP_012778.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:175832-176470:- | gene-YKL144C_NCIM3186 | rna-NM_001179710.1_NCIM3186 | cds-NP_012778.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:174943-175581:- | gene-YKL144C_NCYC1407 | rna-NM_001179710.1_NCYC1407 | cds-NP_012778.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:182040-182678:- | gene-YKL144C_PE2H3 | rna-NM_001179710.1_PE2H3 | cds-NP_012778.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:178334-178972:- | gene-YKL144C_PE2H4 | rna-NM_001179710.1_PE2H4 | cds-NP_012778.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:175843-176481:- | gene-YKL144C_S288C | rna-NM_001179710.1_S288C | cds-NP_012778.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000008.1:92265-92903:- | gene-YKL144C_SA1 | rna-NM_001179710.1_SA1 | cds-NP_012778.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:174967-175605:- | gene-YKL144C_ThermosaccDry | rna-NM_001179710.1_ThermosaccDry | cds-NP_012778.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:174318-174956:- | gene-YKL144C_VR1 | rna-NM_001179710.1_VR1 | cds-NP_012778.1_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:173500-174138:- | gene-YKL144C_ZTW1 | rna-NM_001179710.1_ZTW1 | cds-NP_012778.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:190190-190828:- | gene-YKL144C_Sparadoxus | rna-NM_001179710.1_Sparadoxus | cds-NP_012778.1_Sparadoxus | 93.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |