Gene name: RPC17
Reference locus (S288C): YJL011C
Gene biotype: protein_coding
Description: RNA polymerase III subunit C17; physically interacts with C31, C11, and TFIIIB70; may be involved in the recruitment of pol III by the preinitiation complex; protein abundance increases in response to DNA replication stress; relocalizes to the cytosol in response to hypoxia
Top 10 interactors (score): RET1 (0.999); RPC19 (0.999); RPC53 (0.999); RPC82 (0.999); RPB10 (0.999); RPC34 (0.999); RPC25 (0.999); RPC11 (0.999); RPB5 (0.999); RPC40 (0.999); RPO31 (0.999); RPB8 (0.999); RPC37 (0.999); RPO26 (0.998); RPC31 (0.998); RPC10 (0.997); BDP1 (0.986); BRF1 (0.98); RPB7 (0.967); RPA12 (0.951)
Homologues (species, bitscore): CRCP (Homo sapiens, 61.2); Crcp (Mus musculus, 57.8); crcp (Danio rerio, 55.5); crcp (Xenopus tropicalis, 50.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:397437-397922:- | gene-YJL011C_AKU4011 | rna-NM_001181445.2_AKU4011 | cds-NP_012523.2_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:216242-216727:+ | gene-YJL011C_BG1 | rna-NM_001181445.2_BG1 | cds-NP_012523.2_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:411523-412008:- | gene-YJL011C_Bruggeman | rna-NM_001181445.2_Bruggeman | cds-NP_012523.2_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:415504-415989:- | gene-YJL011C_CAT1 | rna-NM_001181445.2_CAT1 | cds-NP_012523.2_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:409025-409510:- | gene-YJL011C_CBS1585 | rna-NM_001181445.2_CBS1585 | cds-NP_012523.2_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:427400-427885:- | gene-YJL011C_CBS436 | rna-NM_001181445.2_CBS436 | cds-NP_012523.2_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:397250-397735:- | gene-YJL011C_CBS6412 | rna-NM_001181445.2_CBS6412 | cds-NP_012523.2_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:399464-399949:- | gene-YJL011C_CBS6413 | rna-NM_001181445.2_CBS6413 | cds-NP_012523.2_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:396706-397191:- | gene-YJL011C_CENPK1137D | rna-NM_001181445.2_CENPK1137D | cds-NP_012523.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:400310-400795:- | gene-YJL011C_EthanolRed | rna-NM_001181445.2_EthanolRed | cds-NP_012523.2_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:413055-413540:- | gene-YJL011C_FaliES1 | rna-NM_001181445.2_FaliES1 | cds-NP_012523.2_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000200.1:2048-2533:+ | gene-YJL011C_JAY291 | rna-NM_001181445.2_JAY291 | cds-NP_012523.2_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:411862-412347:- | gene-YJL011C_MUCL30387 | rna-NM_001181445.2_MUCL30387 | cds-NP_012523.2_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:407838-408323:- | gene-YJL011C_MUCL30388 | rna-NM_001181445.2_MUCL30388 | cds-NP_012523.2_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:402342-402827:- | gene-YJL011C_MUCL39482 | rna-NM_001181445.2_MUCL39482 | cds-NP_012523.2_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:407795-408280:- | gene-YJL011C_MUCL42920 | rna-NM_001181445.2_MUCL42920 | cds-NP_012523.2_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:414264-414749:- | gene-YJL011C_NCIM3186 | rna-NM_001181445.2_NCIM3186 | cds-NP_012523.2_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:400255-400740:- | gene-YJL011C_NCYC1407 | rna-NM_001181445.2_NCYC1407 | cds-NP_012523.2_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:412404-412889:- | gene-YJL011C_PE2H3 | rna-NM_001181445.2_PE2H3 | cds-NP_012523.2_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:412011-412496:- | gene-YJL011C_PE2H4 | rna-NM_001181445.2_PE2H4 | cds-NP_012523.2_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:414285-414770:- | gene-YJL011C_S288C | rna-NM_001181445.2_S288C | cds-NP_012523.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:209931-210416:- | gene-YJL011C_SA1 | rna-NM_001181445.2_SA1 | cds-NP_012523.2_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:406714-407199:- | gene-YJL011C_ThermosaccDry | rna-NM_001181445.2_ThermosaccDry | cds-NP_012523.2_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:408403-408888:- | gene-YJL011C_VR1 | rna-NM_001181445.2_VR1 | cds-NP_012523.2_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:387211-387696:- | gene-YJL011C_ZTW1 | rna-NM_001181445.2_ZTW1 | cds-NP_012523.2_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:412809-413294:- | gene-YJL011C_Sparadoxus | rna-NM_001181445.2_Sparadoxus | cds-NP_012523.2_Sparadoxus | 90.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |