Gene name: RPC11
Reference locus (S288C): YDR045C
Gene biotype: protein_coding
Description: RNA polymerase III subunit C11; mediates pol III RNA cleavage activity and is important for termination of transcription; homologous to TFIIS
Top 10 interactors (score): RPC53 (0.999); RPO31 (0.999); RPC34 (0.999); RPB5 (0.999); RPC37 (0.999); RET1 (0.999); RPO26 (0.999); RPC17 (0.999); RPC19 (0.999); RPB10 (0.999); RPB8 (0.999); RPC10 (0.999); RPC82 (0.998); RPC25 (0.998); RPC40 (0.998); RPC31 (0.995); RPA12 (0.994); RPB9 (0.987); SPT15 (0.964); BRF1 (0.956)
Homologues (species, bitscore): POLR3K (Homo sapiens, 105.9); Polr3k (Mus musculus, 105.1); polr3k (Danio rerio, 106.7); polr3k (Xenopus tropicalis, 107.8); CG33785 (Drosophila melanogaster, 105.9); Y77E11A.6 (Caenorhabditis elegans, 87.8); AT4G07950 (Arabidopsis thaliana, 74.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:525508-525840:- | gene-YDR045C_AKU4011 | rna-NM_001180353.1_AKU4011 | cds-NP_010330.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:29364-29696:+ | gene-YDR045C_BG1 | rna-NM_001180353.1_BG1 | cds-NP_010330.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:557860-558192:- | gene-YDR045C_Bruggeman | rna-NM_001180353.1_Bruggeman | cds-NP_010330.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:540858-541190:- | gene-YDR045C_CAT1 | rna-NM_001180353.1_CAT1 | cds-NP_010330.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:516465-516797:- | gene-YDR045C_CBS1585 | rna-NM_001180353.1_CBS1585 | cds-NP_010330.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:541635-541967:- | gene-YDR045C_CBS436 | rna-NM_001180353.1_CBS436 | cds-NP_010330.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:512876-513208:- | gene-YDR045C_CBS6412 | rna-NM_001180353.1_CBS6412 | cds-NP_010330.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:541544-541876:- | gene-YDR045C_CBS6413 | rna-NM_001180353.1_CBS6413 | cds-NP_010330.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:546940-547272:- | gene-YDR045C_CENPK1137D | rna-NM_001180353.1_CENPK1137D | cds-NP_010330.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:527331-527663:- | gene-YDR045C_EthanolRed | rna-NM_001180353.1_EthanolRed | cds-NP_010330.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:533786-534118:- | gene-YDR045C_FaliES1 | rna-NM_001180353.1_FaliES1 | cds-NP_010330.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000246.1:20607-20939:+ | gene-YDR045C_JAY291 | rna-NM_001180353.1_JAY291 | cds-NP_010330.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:542519-542851:- | gene-YDR045C_MUCL30387 | rna-NM_001180353.1_MUCL30387 | cds-NP_010330.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:532942-533274:- | gene-YDR045C_MUCL30388 | rna-NM_001180353.1_MUCL30388 | cds-NP_010330.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:517833-518165:- | gene-YDR045C_MUCL39482 | rna-NM_001180353.1_MUCL39482 | cds-NP_010330.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:448067-448399:- | gene-YDR045C_MUCL42920 | rna-NM_001180353.1_MUCL42920 | cds-NP_010330.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:547901-548233:- | gene-YDR045C_NCIM3186 | rna-NM_001180353.1_NCIM3186 | cds-NP_010330.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:516769-517101:- | gene-YDR045C_NCYC1407 | rna-NM_001180353.1_NCYC1407 | cds-NP_010330.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:536398-536730:- | gene-YDR045C_PE2H3 | rna-NM_001180353.1_PE2H3 | cds-NP_010330.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:535703-536035:- | gene-YDR045C_PE2H4 | rna-NM_001180353.1_PE2H4 | cds-NP_010330.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:547978-548310:- | gene-YDR045C_S288C | rna-NM_001180353.1_S288C | cds-NP_010330.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000065.1:65170-65502:- | gene-YDR045C_SA1 | rna-NM_001180353.1_SA1 | cds-NP_010330.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:533512-533844:- | gene-YDR045C_ThermosaccDry | rna-NM_001180353.1_ThermosaccDry | cds-NP_010330.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:546217-546549:- | gene-YDR045C_VR1 | rna-NM_001180353.1_VR1 | cds-NP_010330.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:531121-531453:- | gene-YDR045C_ZTW1 | rna-NM_001180353.1_ZTW1 | cds-NP_010330.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:535506-535838:- | gene-YDR045C_Sparadoxus | rna-NM_001180353.1_Sparadoxus | cds-NP_010330.1_Sparadoxus | 95.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |