Gene name: RPC10
Reference locus (S288C): YHR143W-A
Gene biotype: protein_coding
Description: Dna-directed rna polymerases i, ii, and iii subunit rpabc4; RNA polymerase subunit ABC10-alpha, found in RNA pol I, II, and III; relocalizes from nucleolus to cytoplasm upon DNA replication stress
Top 10 interactors (score): RET1 (0.999); TFG2 (0.999); RPB7 (0.999); RPB2 (0.999); RPB4 (0.999); RPC11 (0.999); RPB3 (0.999); RPB11 (0.999); RPA12 (0.999); RTR1 (0.999); RPA43 (0.999); RPO26 (0.999); RPA190 (0.999); RPA135 (0.999); RPC25 (0.999); RPO21 (0.999); RPB10 (0.999); RPB8 (0.999); RPB5 (0.999); RPC40 (0.999)
Homologues (species, bitscore): POLR2K (Homo sapiens, 55.8); Polr2k (Mus musculus, 56.2); polr2k (Danio rerio, 55.5); polr2k (Xenopus tropicalis, 55.8); Rpb12 (Drosophila melanogaster, 55.1); rpb-12 (Caenorhabditis elegans, 54.3); NRPB12 (Arabidopsis thaliana, 54.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:374138-374350:+ | gene-YHR143W-A_AKU4011 | rna-NM_001179273.1_AKU4011 | cds-NP_012013.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000141.1:143250-143462:- | gene-YHR143W-A_BG1 | rna-NM_001179273.1_BG1 | cds-NP_012013.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:381620-381832:+ | gene-YHR143W-A_Bruggeman | rna-NM_001179273.1_Bruggeman | cds-NP_012013.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:376588-376800:+ | gene-YHR143W-A_CAT1 | rna-NM_001179273.1_CAT1 | cds-NP_012013.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:373160-373372:+ | gene-YHR143W-A_CBS1585 | rna-NM_001179273.1_CBS1585 | cds-NP_012013.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:370528-370740:+ | gene-YHR143W-A_CBS436 | rna-NM_001179273.1_CBS436 | cds-NP_012013.1_CBS436 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:374601-374813:+ | gene-YHR143W-A_CBS6412 | rna-NM_001179273.1_CBS6412 | cds-NP_012013.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:374190-374402:+ | gene-YHR143W-A_CBS6413 | rna-NM_001179273.1_CBS6413 | cds-NP_012013.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:380403-380615:+ | gene-YHR143W-A_CENPK1137D | rna-NM_001179273.1_CENPK1137D | cds-NP_012013.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:433049-433261:+ | gene-YHR143W-A_EthanolRed | rna-NM_001179273.1_EthanolRed | cds-NP_012013.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:374538-374750:+ | gene-YHR143W-A_FaliES1 | rna-NM_001179273.1_FaliES1 | cds-NP_012013.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000440.1:4994-5206:+ | gene-YHR143W-A_JAY291 | rna-NM_001179273.1_JAY291 | cds-NP_012013.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:381374-381586:+ | gene-YHR143W-A_MUCL30387 | rna-NM_001179273.1_MUCL30387 | cds-NP_012013.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:381370-381582:+ | gene-YHR143W-A_MUCL30388 | rna-NM_001179273.1_MUCL30388 | cds-NP_012013.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:373504-373716:+ | gene-YHR143W-A_MUCL39482 | rna-NM_001179273.1_MUCL39482 | cds-NP_012013.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:379748-379960:+ | gene-YHR143W-A_MUCL42920 | rna-NM_001179273.1_MUCL42920 | cds-NP_012013.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:387115-387327:+ | gene-YHR143W-A_NCIM3186 | rna-NM_001179273.1_NCIM3186 | cds-NP_012013.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:375712-375924:+ | gene-YHR143W-A_NCYC1407 | rna-NM_001179273.1_NCYC1407 | cds-NP_012013.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:375194-375406:+ | gene-YHR143W-A_PE2H3 | rna-NM_001179273.1_PE2H3 | cds-NP_012013.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:382621-382833:+ | gene-YHR143W-A_PE2H4 | rna-NM_001179273.1_PE2H4 | cds-NP_012013.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:387233-387445:+ | gene-YHR143W-A_S288C | rna-NM_001179273.1_S288C | cds-NP_012013.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000103.1:1944-2156:- | gene-YHR143W-A_SA1 | rna-NM_001179273.1_SA1 | cds-NP_012013.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:375621-375833:+ | gene-YHR143W-A_ThermosaccDry | rna-NM_001179273.1_ThermosaccDry | cds-NP_012013.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:384111-384323:+ | gene-YHR143W-A_VR1 | rna-NM_001179273.1_VR1 | cds-NP_012013.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:366614-366826:+ | gene-YHR143W-A_ZTW1 | rna-NM_001179273.1_ZTW1 | cds-NP_012013.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:373091-373303:+ | gene-YHR143W-A_Sparadoxus | rna-NM_001179273.1_Sparadoxus | cds-NP_012013.1_Sparadoxus | 93.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |