Gene name: RPB9
Reference locus (S288C): YGL070C
Gene biotype: protein_coding
Description: RNA polymerase II subunit B12.6; contacts DNA; mutations affect transcription start site selection and fidelity of transcription
Top 10 interactors (score): RAD26 (0.999); RPB4 (0.999); RPB2 (0.999); RPB7 (0.999); TFG2 (0.999); RPB11 (0.999); TFG1 (0.999); RPB5 (0.999); SUA7 (0.999); RPO26 (0.999); RPB3 (0.999); RTR1 (0.999); SPT4 (0.999); DST1 (0.999); RPO21 (0.999); RPB10 (0.999); RPB8 (0.999); RPC10 (0.999); TFA1 (0.998); SPT5 (0.998)
Homologues (species, bitscore): POLR2I (Homo sapiens, 109.4); Polr2i (Mus musculus, 109.4); polr2i (Danio rerio, 111.7); RpII15 (Drosophila melanogaster, 120.6); rpb-9 (Caenorhabditis elegans, 106.3); NRPB9B (Arabidopsis thaliana, 107.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:377464-377832:- | gene-YGL070C_AKU4011 | rna-NM_001180935.1_AKU4011 | cds-NP_011445.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:27565-27933:+ | gene-YGL070C_BG1 | rna-NM_001180935.1_BG1 | cds-NP_011445.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:379943-380311:- | gene-YGL070C_Bruggeman | rna-NM_001180935.1_Bruggeman | cds-NP_011445.1_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:376940-377308:- | gene-YGL070C_CAT1 | rna-NM_001180935.1_CAT1 | cds-NP_011445.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:381009-381377:- | gene-YGL070C_CBS1585 | rna-NM_001180935.1_CBS1585 | cds-NP_011445.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:375134-375502:- | gene-YGL070C_CBS436 | rna-NM_001180935.1_CBS436 | cds-NP_011445.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:365168-365536:- | gene-YGL070C_CBS6412 | rna-NM_001180935.1_CBS6412 | cds-NP_011445.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:375094-375462:- | gene-YGL070C_CBS6413 | rna-NM_001180935.1_CBS6413 | cds-NP_011445.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:374646-375014:- | gene-YGL070C_CENPK1137D | rna-NM_001180935.1_CENPK1137D | cds-NP_011445.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:366536-366904:- | gene-YGL070C_EthanolRed | rna-NM_001180935.1_EthanolRed | cds-NP_011445.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:369097-369465:- | gene-YGL070C_FaliES1 | rna-NM_001180935.1_FaliES1 | cds-NP_011445.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000369.1:54792-55160:- | gene-YGL070C_JAY291 | rna-NM_001180935.1_JAY291 | cds-NP_011445.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:377139-377507:- | gene-YGL070C_MUCL30387 | rna-NM_001180935.1_MUCL30387 | cds-NP_011445.1_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:379907-380275:- | gene-YGL070C_MUCL30388 | rna-NM_001180935.1_MUCL30388 | cds-NP_011445.1_MUCL30388 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:377317-377685:- | gene-YGL070C_MUCL39482 | rna-NM_001180935.1_MUCL39482 | cds-NP_011445.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:196423-196791:+ | gene-YGL070C_MUCL42920 | rna-NM_001180935.1_MUCL42920 | cds-NP_011445.1_MUCL42920 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:374459-374827:- | gene-YGL070C_NCIM3186 | rna-NM_001180935.1_NCIM3186 | cds-NP_011445.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:368851-369219:- | gene-YGL070C_NCYC1407 | rna-NM_001180935.1_NCYC1407 | cds-NP_011445.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:370505-370873:- | gene-YGL070C_PE2H3 | rna-NM_001180935.1_PE2H3 | cds-NP_011445.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:375543-375911:- | gene-YGL070C_PE2H4 | rna-NM_001180935.1_PE2H4 | cds-NP_011445.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:374459-374827:- | gene-YGL070C_S288C | rna-NM_001180935.1_S288C | cds-NP_011445.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000096.1:9609-9977:- | gene-YGL070C_SA1 | rna-NM_001180935.1_SA1 | cds-NP_011445.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:369348-369716:- | gene-YGL070C_ThermosaccDry | rna-NM_001180935.1_ThermosaccDry | cds-NP_011445.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:479729-480097:- | gene-YGL070C_VR1 | rna-NM_001180935.1_VR1 | cds-NP_011445.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:366711-367079:- | gene-YGL070C_ZTW1 | rna-NM_001180935.1_ZTW1 | cds-NP_011445.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:372303-372671:- | gene-YGL070C_Sparadoxus | rna-NM_001180935.1_Sparadoxus | cds-NP_011445.1_Sparadoxus | 93.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |