Gene name: RPB8
Reference locus (S288C): YOR224C
Gene biotype: protein_coding
Description: Dna-directed rna polymerases i, ii, and iii subunit rpabc3; RNA polymerase subunit ABC14.5; common to RNA polymerases I, II, and III
Top 10 interactors (score): RPA190 (0.999); RPA43 (0.999); RPC17 (0.999); ELF1 (0.999); RTR1 (0.999); RPC11 (0.999); RPB3 (0.999); SUA7 (0.999); RET1 (0.999); RPO26 (0.999); RPC10 (0.999); RPA12 (0.999); RPB7 (0.999); RPB2 (0.999); RPB4 (0.999); RPC25 (0.999); RPO21 (0.999); RPB10 (0.999); RPC19 (0.999); RPB9 (0.999)
Homologues (species, bitscore): POLR2H (Homo sapiens, 62.4); Polr2h (Mus musculus, 86.7); polr2h (Danio rerio, 93.2); polr2h (Xenopus tropicalis, 85.9); Rpb8 (Drosophila melanogaster, 86.3); rpb-8 (Caenorhabditis elegans, 78.2); NRPB8A (Arabidopsis thaliana, 90.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:751607-752047:- | gene-YOR224C_AKU4011 | rna-NM_001183643.1_AKU4011 | cds-NP_014867.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:153641-154081:- | gene-YOR224C_BG1 | rna-NM_001183643.1_BG1 | cds-NP_014867.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:737070-737510:- | gene-YOR224C_Bruggeman | rna-NM_001183643.1_Bruggeman | cds-NP_014867.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:737718-738158:- | gene-YOR224C_CAT1 | rna-NM_001183643.1_CAT1 | cds-NP_014867.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:734594-735034:- | gene-YOR224C_CBS1585 | rna-NM_001183643.1_CBS1585 | cds-NP_014867.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:733283-733723:- | gene-YOR224C_CBS436 | rna-NM_001183643.1_CBS436 | cds-NP_014867.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:731713-732153:- | gene-YOR224C_CBS6412 | rna-NM_001183643.1_CBS6412 | cds-NP_014867.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:740352-740792:- | gene-YOR224C_CBS6413 | rna-NM_001183643.1_CBS6413 | cds-NP_014867.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:760593-761033:- | gene-YOR224C_CENPK1137D | rna-NM_001183643.1_CENPK1137D | cds-NP_014867.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:727744-728184:- | gene-YOR224C_EthanolRed | rna-NM_001183643.1_EthanolRed | cds-NP_014867.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:733141-733581:- | gene-YOR224C_FaliES1 | rna-NM_001183643.1_FaliES1 | cds-NP_014867.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000381.1:93180-93620:+ | gene-YOR224C_JAY291 | rna-NM_001183643.1_JAY291 | cds-NP_014867.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:740409-740849:- | gene-YOR224C_MUCL30387 | rna-NM_001183643.1_MUCL30387 | cds-NP_014867.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:747828-748268:- | gene-YOR224C_MUCL30388 | rna-NM_001183643.1_MUCL30388 | cds-NP_014867.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:741923-742363:- | gene-YOR224C_MUCL39482 | rna-NM_001183643.1_MUCL39482 | cds-NP_014867.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:751506-751946:- | gene-YOR224C_MUCL42920 | rna-NM_001183643.1_MUCL42920 | cds-NP_014867.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:760714-761154:- | gene-YOR224C_NCIM3186 | rna-NM_001183643.1_NCIM3186 | cds-NP_014867.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:742025-742465:- | gene-YOR224C_NCYC1407 | rna-NM_001183643.1_NCYC1407 | cds-NP_014867.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:741416-741856:- | gene-YOR224C_PE2H3 | rna-NM_001183643.1_PE2H3 | cds-NP_014867.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:751793-752233:- | gene-YOR224C_PE2H4 | rna-NM_001183643.1_PE2H4 | cds-NP_014867.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:760825-761265:- | gene-YOR224C_S288C | rna-NM_001183643.1_S288C | cds-NP_014867.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000006.1:170823-171263:- | gene-YOR224C_SA1 | rna-NM_001183643.1_SA1 | cds-NP_014867.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:732326-732766:- | gene-YOR224C_ThermosaccDry | rna-NM_001183643.1_ThermosaccDry | cds-NP_014867.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:795857-796297:- | gene-YOR224C_VR1 | rna-NM_001183643.1_VR1 | cds-NP_014867.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:465226-465666:- | gene-YOR224C_ZTW1 | rna-NM_001183643.1_ZTW1 | cds-NP_014867.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:738185-738625:- | gene-YOR224C_Sparadoxus | rna-NM_001183643.1_Sparadoxus | cds-NP_014867.1_Sparadoxus | 93.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |