Gene name: RPB7
Reference locus (S288C): YDR404C
Gene biotype: protein_coding
Description: RNA polymerase II subunit B16; forms dissociable heterodimer with Rpb4p; Rpb4/7 dissociates from RNAPII as Ser2 CTD phosphorylation increases; Rpb4/7 regulates cellular lifespan via mRNA decay process; involved in recruitment of 3'-end processing factors to transcribing RNA polymerase II complex, export of mRNA to cytoplasm under stress conditions; also involved in translation initiation
Top 10 interactors (score): RPB2 (0.999); RPB11 (0.999); RPB5 (0.999); ELF1 (0.999); RTR1 (0.999); SPT4 (0.999); RPB3 (0.999); RPO26 (0.999); SPT5 (0.999); SUA7 (0.999); RPC10 (0.999); RPB8 (0.999); RPO21 (0.999); RPB10 (0.999); RPB9 (0.999); DST1 (0.999); RPB4 (0.999); TFG2 (0.999); FCP1 (0.998); MED7 (0.997)
Homologues (species, bitscore): POLR2G (Homo sapiens, 148.3); Polr2g (Mus musculus, 148.3); polr2gl (Danio rerio, 147.5); polr2g (Xenopus tropicalis, 147.5); Rpb7 (Drosophila melanogaster, 143.7); rpb-7 (Caenorhabditis elegans, 141.0); NRPB7 (Arabidopsis thaliana, 138.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1216800-1217315:- | gene-YDR404C_AKU4011 | rna-NM_001180712.3_AKU4011 | cds-NP_010692.3_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:95284-95799:- | gene-YDR404C_BG1 | rna-NM_001180712.3_BG1 | cds-NP_010692.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1247685-1248200:- | gene-YDR404C_Bruggeman | rna-NM_001180712.3_Bruggeman | cds-NP_010692.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1226241-1226756:- | gene-YDR404C_CAT1 | rna-NM_001180712.3_CAT1 | cds-NP_010692.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1211720-1212235:- | gene-YDR404C_CBS1585 | rna-NM_001180712.3_CBS1585 | cds-NP_010692.3_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1230587-1231102:- | gene-YDR404C_CBS436 | rna-NM_001180712.3_CBS436 | cds-NP_010692.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1207774-1208289:- | gene-YDR404C_CBS6412 | rna-NM_001180712.3_CBS6412 | cds-NP_010692.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1229629-1230144:- | gene-YDR404C_CBS6413 | rna-NM_001180712.3_CBS6413 | cds-NP_010692.3_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1275314-1275829:- | gene-YDR404C_CENPK1137D | rna-NM_001180712.3_CENPK1137D | cds-NP_010692.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1221206-1221721:- | gene-YDR404C_EthanolRed | rna-NM_001180712.3_EthanolRed | cds-NP_010692.3_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1224516-1225031:- | gene-YDR404C_FaliES1 | rna-NM_001180712.3_FaliES1 | cds-NP_010692.3_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000181.1:30501-31016:+ | gene-YDR404C_JAY291 | rna-NM_001180712.3_JAY291 | cds-NP_010692.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1231247-1231762:- | gene-YDR404C_MUCL30387 | rna-NM_001180712.3_MUCL30387 | cds-NP_010692.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1213353-1213868:- | gene-YDR404C_MUCL30388 | rna-NM_001180712.3_MUCL30388 | cds-NP_010692.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1203048-1203563:- | gene-YDR404C_MUCL39482 | rna-NM_001180712.3_MUCL39482 | cds-NP_010692.3_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1145486-1146001:- | gene-YDR404C_MUCL42920 | rna-NM_001180712.3_MUCL42920 | cds-NP_010692.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1276577-1277092:- | gene-YDR404C_NCIM3186 | rna-NM_001180712.3_NCIM3186 | cds-NP_010692.3_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1217020-1217535:- | gene-YDR404C_NCYC1407 | rna-NM_001180712.3_NCYC1407 | cds-NP_010692.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1227153-1227668:- | gene-YDR404C_PE2H3 | rna-NM_001180712.3_PE2H3 | cds-NP_010692.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1232721-1233236:- | gene-YDR404C_PE2H4 | rna-NM_001180712.3_PE2H4 | cds-NP_010692.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1276654-1277169:- | gene-YDR404C_S288C | rna-NM_001180712.3_S288C | cds-NP_010692.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000071.1:30618-31133:+ | gene-YDR404C_SA1 | rna-NM_001180712.3_SA1 | cds-NP_010692.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1228778-1229293:- | gene-YDR404C_ThermosaccDry | rna-NM_001180712.3_ThermosaccDry | cds-NP_010692.3_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1243959-1244474:- | gene-YDR404C_VR1 | rna-NM_001180712.3_VR1 | cds-NP_010692.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:271579-272094:- | gene-YDR404C_ZTW1 | rna-NM_001180712.3_ZTW1 | cds-NP_010692.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1223978-1224493:- | gene-YDR404C_Sparadoxus | rna-NM_001180712.3_Sparadoxus | cds-NP_010692.3_Sparadoxus | 94.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |