Gene name: RPB5
Reference locus (S288C): YBR154C
Gene biotype: protein_coding
Description: RNA polymerase subunit ABC27; common to RNA polymerases I, II, and III; contacts DNA and affects transactivation; Belongs to the archaeal RpoH/eukaryotic RPB5 RNA polymerase subunit family
Top 10 interactors (score): RPC25 (0.999); DST1 (0.999); RPC19 (0.999); RPC31 (0.999); RPB8 (0.999); RPC10 (0.999); RPB9 (0.999); SUA7 (0.999); RPA190 (0.999); RTR1 (0.999); RPA43 (0.999); RET1 (0.999); RPO26 (0.999); SPT5 (0.999); ELF1 (0.999); RPO21 (0.999); RPB10 (0.999); RPC11 (0.999); RPB3 (0.999); RPC17 (0.999)
Homologues (species, bitscore): POLR2E (Homo sapiens, 185.7); Polr2e (Mus musculus, 188.7); polr2eb (Danio rerio, 188.0); polr2e (Xenopus tropicalis, 190.3); Rpb5 (Drosophila melanogaster, 185.3); rpb-5 (Caenorhabditis elegans, 189.5); NRPB5 (Arabidopsis thaliana, 170.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:531246-531893:- | gene-YBR154C_AKU4011 | rna-NM_001178502.1_AKU4011 | cds-NP_009712.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:521811-522458:- | gene-YBR154C_BG1 | rna-NM_001178502.1_BG1 | cds-NP_009712.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:534283-534930:- | gene-YBR154C_Bruggeman | rna-NM_001178502.1_Bruggeman | cds-NP_009712.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:428385-429032:- | gene-YBR154C_CAT1 | rna-NM_001178502.1_CAT1 | cds-NP_009712.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:523025-523672:- | gene-YBR154C_CBS1585 | rna-NM_001178502.1_CBS1585 | cds-NP_009712.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:531118-531765:- | gene-YBR154C_CBS436 | rna-NM_001178502.1_CBS436 | cds-NP_009712.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:620891-621538:- | gene-YBR154C_CBS6412 | rna-NM_001178502.1_CBS6412 | cds-NP_009712.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:528660-529307:- | gene-YBR154C_CBS6413 | rna-NM_001178502.1_CBS6413 | cds-NP_009712.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:542130-542777:- | gene-YBR154C_CENPK1137D | rna-NM_001178502.1_CENPK1137D | cds-NP_009712.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:657266-657913:- | gene-YBR154C_EthanolRed | rna-NM_001178502.1_EthanolRed | cds-NP_009712.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:547278-547925:- | gene-YBR154C_FaliES1 | rna-NM_001178502.1_FaliES1 | cds-NP_009712.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000322.1:12239-12886:+ | gene-YBR154C_JAY291 | rna-NM_001178502.1_JAY291 | cds-NP_009712.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:535910-536557:- | gene-YBR154C_MUCL30387 | rna-NM_001178502.1_MUCL30387 | cds-NP_009712.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:535203-535850:- | gene-YBR154C_MUCL30388 | rna-NM_001178502.1_MUCL30388 | cds-NP_009712.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:521412-522059:- | gene-YBR154C_MUCL39482 | rna-NM_001178502.1_MUCL39482 | cds-NP_009712.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:531304-531951:- | gene-YBR154C_MUCL42920 | rna-NM_001178502.1_MUCL42920 | cds-NP_009712.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:548159-548806:- | gene-YBR154C_NCIM3186 | rna-NM_001178502.1_NCIM3186 | cds-NP_009712.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:523962-524609:- | gene-YBR154C_NCYC1407 | rna-NM_001178502.1_NCYC1407 | cds-NP_009712.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:536595-537242:- | gene-YBR154C_PE2H3 | rna-NM_001178502.1_PE2H3 | cds-NP_009712.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:534271-534918:- | gene-YBR154C_PE2H4 | rna-NM_001178502.1_PE2H4 | cds-NP_009712.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:548362-549009:- | gene-YBR154C_S288C | rna-NM_001178502.1_S288C | cds-NP_009712.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000032.1:69540-70187:- | gene-YBR154C_SA1 | rna-NM_001178502.1_SA1 | cds-NP_009712.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:546291-546938:- | gene-YBR154C_ThermosaccDry | rna-NM_001178502.1_ThermosaccDry | cds-NP_009712.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:527786-528433:- | gene-YBR154C_VR1 | rna-NM_001178502.1_VR1 | cds-NP_009712.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:521437-522084:- | gene-YBR154C_ZTW1 | rna-NM_001178502.1_ZTW1 | cds-NP_009712.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:558583-559230:- | gene-YBR154C_Sparadoxus | rna-NM_001178502.1_Sparadoxus | cds-NP_009712.1_Sparadoxus | 94.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |