Gene name: RPB3
Reference locus (S288C): YIL021W
Gene biotype: protein_coding
Description: RNA polymerase II third largest subunit B44; part of central core; similar to prokaryotic alpha subunit
Top 10 interactors (score): TFG1 (0.999); RPB11 (0.999); RPB7 (0.999); TFG2 (0.999); RPB4 (0.999); RPB2 (0.999); RPB5 (0.999); SUA7 (0.999); RPO26 (0.999); SPT5 (0.999); SPT4 (0.999); RTR1 (0.999); ELF1 (0.999); DST1 (0.999); RPB9 (0.999); RPB10 (0.999); RPO21 (0.999); RPB8 (0.999); RPC10 (0.999); MED7 (0.997)
Homologues (species, bitscore): POLR2C (Homo sapiens, 228.4); Polr2c (Mus musculus, 229.9); polr2c (Danio rerio, 221.9); polr2c (Xenopus tropicalis, 201.8); RpII33 (Drosophila melanogaster, 235.0); rpb-3 (Caenorhabditis elegans, 213.0); NRPB3 (Arabidopsis thaliana, 177.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:311363-312319:+ | gene-YIL021W_AKU4011 | rna-NM_001179371.3_AKU4011 | cds-NP_012243.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000164.1:171189-172145:+ | gene-YIL021W_BG1 | rna-NM_001179371.3_BG1 | cds-NP_012243.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:316507-317463:+ | gene-YIL021W_Bruggeman | rna-NM_001179371.3_Bruggeman | cds-NP_012243.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:303923-304879:+ | gene-YIL021W_CAT1 | rna-NM_001179371.3_CAT1 | cds-NP_012243.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:311454-312410:+ | gene-YIL021W_CBS1585 | rna-NM_001179371.3_CBS1585 | cds-NP_012243.3_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:304887-305843:+ | gene-YIL021W_CBS436 | rna-NM_001179371.3_CBS436 | cds-NP_012243.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:306986-307942:+ | gene-YIL021W_CBS6412 | rna-NM_001179371.3_CBS6412 | cds-NP_012243.3_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:303368-304324:+ | gene-YIL021W_CBS6413 | rna-NM_001179371.3_CBS6413 | cds-NP_012243.3_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:304814-305770:+ | gene-YIL021W_CENPK1137D | rna-NM_001179371.3_CENPK1137D | cds-NP_012243.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:294329-295285:+ | gene-YIL021W_EthanolRed | rna-NM_001179371.3_EthanolRed | cds-NP_012243.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:312240-313196:+ | gene-YIL021W_FaliES1 | rna-NM_001179371.3_FaliES1 | cds-NP_012243.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000098.1:3790-4746:- | gene-YIL021W_JAY291 | rna-NM_001179371.3_JAY291 | cds-NP_012243.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:313357-314313:+ | gene-YIL021W_MUCL30387 | rna-NM_001179371.3_MUCL30387 | cds-NP_012243.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:309462-310418:+ | gene-YIL021W_MUCL30388 | rna-NM_001179371.3_MUCL30388 | cds-NP_012243.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:312043-312999:+ | gene-YIL021W_MUCL39482 | rna-NM_001179371.3_MUCL39482 | cds-NP_012243.3_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:315177-316133:+ | gene-YIL021W_MUCL42920 | rna-NM_001179371.3_MUCL42920 | cds-NP_012243.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:312905-313861:+ | gene-YIL021W_NCIM3186 | rna-NM_001179371.3_NCIM3186 | cds-NP_012243.3_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:316316-317272:+ | gene-YIL021W_NCYC1407 | rna-NM_001179371.3_NCYC1407 | cds-NP_012243.3_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:307958-308914:+ | gene-YIL021W_PE2H3 | rna-NM_001179371.3_PE2H3 | cds-NP_012243.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:302664-303620:+ | gene-YIL021W_PE2H4 | rna-NM_001179371.3_PE2H4 | cds-NP_012243.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:312905-313861:+ | gene-YIL021W_S288C | rna-NM_001179371.3_S288C | cds-NP_012243.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000031.1:10669-11625:- | gene-YIL021W_SA1 | rna-NM_001179371.3_SA1 | cds-NP_012243.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:310909-311865:+ | gene-YIL021W_ThermosaccDry | rna-NM_001179371.3_ThermosaccDry | cds-NP_012243.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:307546-308502:+ | gene-YIL021W_VR1 | rna-NM_001179371.3_VR1 | cds-NP_012243.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:285329-286285:+ | gene-YIL021W_ZTW1 | rna-NM_001179371.3_ZTW1 | cds-NP_012243.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:306050-307006:+ | gene-YIL021W_Sparadoxus | rna-NM_001179371.3_Sparadoxus | cds-NP_012243.3_Sparadoxus | 93.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |