Gene name: RPB2
Reference locus (S288C): YOR151C
Gene biotype: protein_coding
Description: RNA polymerase II second largest subunit B150; part of central core; similar to bacterial beta subunit
Top 10 interactors (score): RPB7 (0.999); RPB4 (0.999); TFG2 (0.999); RPB11 (0.999); DST1 (0.999); RPB9 (0.999); RPO21 (0.999); RPB10 (0.999); RPC10 (0.999); RPB8 (0.999); SUA7 (0.999); RPO26 (0.999); SPT5 (0.999); RPB3 (0.999); SPT4 (0.999); ELF1 (0.999); RTR1 (0.999); TFG1 (0.999); RPB5 (0.999); TFA2 (0.998)
Homologues (species, bitscore): POLR2B (Homo sapiens, 1449.5); Polr2b (Mus musculus, 1448.0); polr2b (Danio rerio, 1357.0); polr2b (Xenopus tropicalis, 1348.6); RpII140 (Drosophila melanogaster, 1435.2); rpb-2 (Caenorhabditis elegans, 1400.2); NRPB2 (Arabidopsis thaliana, 1522.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:610525-614199:- | gene-YOR151C_AKU4011 | rna-NM_001183570.3_AKU4011 | cds-NP_014794.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:12371-16045:- | gene-YOR151C_BG1 | rna-NM_001183570.3_BG1 | cds-NP_014794.3_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:594688-598362:- | gene-YOR151C_Bruggeman | rna-NM_001183570.3_Bruggeman | cds-NP_014794.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:594706-598380:- | gene-YOR151C_CAT1 | rna-NM_001183570.3_CAT1 | cds-NP_014794.3_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:593000-596674:- | gene-YOR151C_CBS1585 | rna-NM_001183570.3_CBS1585 | cds-NP_014794.3_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:591410-595084:- | gene-YOR151C_CBS436 | rna-NM_001183570.3_CBS436 | cds-NP_014794.3_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:590638-594312:- | gene-YOR151C_CBS6412 | rna-NM_001183570.3_CBS6412 | cds-NP_014794.3_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:599408-603082:- | gene-YOR151C_CBS6413 | rna-NM_001183570.3_CBS6413 | cds-NP_014794.3_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:612753-616427:- | gene-YOR151C_CENPK1137D | rna-NM_001183570.3_CENPK1137D | cds-NP_014794.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:586837-590511:- | gene-YOR151C_EthanolRed | rna-NM_001183570.3_EthanolRed | cds-NP_014794.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:591690-595364:- | gene-YOR151C_FaliES1 | rna-NM_001183570.3_FaliES1 | cds-NP_014794.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000070.1:48186-51860:+ | gene-YOR151C_JAY291 | rna-NM_001183570.3_JAY291 | cds-NP_014794.3_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:599495-603169:- | gene-YOR151C_MUCL30387 | rna-NM_001183570.3_MUCL30387 | cds-NP_014794.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:606252-609926:- | gene-YOR151C_MUCL30388 | rna-NM_001183570.3_MUCL30388 | cds-NP_014794.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:600922-604596:- | gene-YOR151C_MUCL39482 | rna-NM_001183570.3_MUCL39482 | cds-NP_014794.3_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:610378-614052:- | gene-YOR151C_MUCL42920 | rna-NM_001183570.3_MUCL42920 | cds-NP_014794.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:612886-616560:- | gene-YOR151C_NCIM3186 | rna-NM_001183570.3_NCIM3186 | cds-NP_014794.3_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:601045-604719:- | gene-YOR151C_NCYC1407 | rna-NM_001183570.3_NCYC1407 | cds-NP_014794.3_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:599551-603225:- | gene-YOR151C_PE2H3 | rna-NM_001183570.3_PE2H3 | cds-NP_014794.3_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:609928-613602:- | gene-YOR151C_PE2H4 | rna-NM_001183570.3_PE2H4 | cds-NP_014794.3_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:612997-616671:- | gene-YOR151C_S288C | rna-NM_001183570.3_S288C | cds-NP_014794.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000006.1:29537-33211:- | gene-YOR151C_SA1 | rna-NM_001183570.3_SA1 | cds-NP_014794.3_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:590873-594547:- | gene-YOR151C_ThermosaccDry | rna-NM_001183570.3_ThermosaccDry | cds-NP_014794.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:654551-658225:- | gene-YOR151C_VR1 | rna-NM_001183570.3_VR1 | cds-NP_014794.3_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:324319-327993:- | gene-YOR151C_ZTW1 | rna-NM_001183570.3_ZTW1 | cds-NP_014794.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:595962-599636:- | gene-YOR151C_Sparadoxus | rna-NM_001183570.3_Sparadoxus | cds-NP_014794.3_Sparadoxus | 93.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |