Gene name: RPB11
Reference locus (S288C): YOL005C
Gene biotype: protein_coding
Description: RNA polymerase II subunit B12.5; part of central core; similar to Rpc19p and bacterial alpha subunit
Top 10 interactors (score): RPB8 (0.999); RPB7 (0.999); RPB4 (0.999); RPB2 (0.999); RPB5 (0.999); RTR1 (0.999); ELF1 (0.999); RPB3 (0.999); RPO26 (0.999); SUA7 (0.999); RPC10 (0.999); RPB10 (0.999); RPO21 (0.999); RPB9 (0.999); DST1 (0.999); SSL2 (0.998); TFG2 (0.998); MED7 (0.998); SPT5 (0.997); SPT4 (0.997)
Homologues (species, bitscore): POLR2J (Homo sapiens, 115.9); Polr2j (Mus musculus, 115.9); polr2j (Danio rerio, 116.7); polr2j (Xenopus tropicalis, 114.4); Rpb11 (Drosophila melanogaster, 107.5); rpb-11 (Caenorhabditis elegans, 95.5); NRPB11 (Arabidopsis thaliana, 84.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:300172-300534:- | gene-YOL005C_AKU4011 | rna-NM_001183259.1_AKU4011 | cds-NP_014638.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000152.1:115768-116130:- | gene-YOL005C_BG1 | rna-NM_001183259.1_BG1 | cds-NP_014638.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:302994-303356:- | gene-YOL005C_Bruggeman | rna-NM_001183259.1_Bruggeman | cds-NP_014638.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:301127-301489:- | gene-YOL005C_CAT1 | rna-NM_001183259.1_CAT1 | cds-NP_014638.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:294848-295210:- | gene-YOL005C_CBS1585 | rna-NM_001183259.1_CBS1585 | cds-NP_014638.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:299119-299481:- | gene-YOL005C_CBS436 | rna-NM_001183259.1_CBS436 | cds-NP_014638.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:294199-294561:- | gene-YOL005C_CBS6412 | rna-NM_001183259.1_CBS6412 | cds-NP_014638.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:301732-302094:- | gene-YOL005C_CBS6413 | rna-NM_001183259.1_CBS6413 | cds-NP_014638.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:315544-315906:- | gene-YOL005C_CENPK1137D | rna-NM_001183259.1_CENPK1137D | cds-NP_014638.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:296984-297346:- | gene-YOL005C_EthanolRed | rna-NM_001183259.1_EthanolRed | cds-NP_014638.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:300311-300673:- | gene-YOL005C_FaliES1 | rna-NM_001183259.1_FaliES1 | cds-NP_014638.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000015.1:28593-28955:+ | gene-YOL005C_JAY291 | rna-NM_001183259.1_JAY291 | cds-NP_014638.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:307197-307559:- | gene-YOL005C_MUCL30387 | rna-NM_001183259.1_MUCL30387 | cds-NP_014638.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:310632-310994:- | gene-YOL005C_MUCL30388 | rna-NM_001183259.1_MUCL30388 | cds-NP_014638.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:302331-302693:- | gene-YOL005C_MUCL39482 | rna-NM_001183259.1_MUCL39482 | cds-NP_014638.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:317232-317594:- | gene-YOL005C_MUCL42920 | rna-NM_001183259.1_MUCL42920 | cds-NP_014638.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:315702-316064:- | gene-YOL005C_NCIM3186 | rna-NM_001183259.1_NCIM3186 | cds-NP_014638.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:309064-309426:- | gene-YOL005C_NCYC1407 | rna-NM_001183259.1_NCYC1407 | cds-NP_014638.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:303708-304070:- | gene-YOL005C_PE2H3 | rna-NM_001183259.1_PE2H3 | cds-NP_014638.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:314100-314462:- | gene-YOL005C_PE2H4 | rna-NM_001183259.1_PE2H4 | cds-NP_014638.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:315813-316175:- | gene-YOL005C_S288C | rna-NM_001183259.1_S288C | cds-NP_014638.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:283795-284157:- | gene-YOL005C_SA1 | rna-NM_001183259.1_SA1 | cds-NP_014638.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:298882-299244:- | gene-YOL005C_ThermosaccDry | rna-NM_001183259.1_ThermosaccDry | cds-NP_014638.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:299670-300032:- | gene-YOL005C_VR1 | rna-NM_001183259.1_VR1 | cds-NP_014638.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:33547-33909:- | gene-YOL005C_ZTW1 | rna-NM_001183259.1_ZTW1 | cds-NP_014638.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:307195-307557:- | gene-YOL005C_Sparadoxus | rna-NM_001183259.1_Sparadoxus | cds-NP_014638.1_Sparadoxus | 92.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |