Gene name: RPA49
Reference locus (S288C): YNL248C
Gene biotype: protein_coding
Description: RNA polymerase I subunit A49; essential for nucleolar assembly and for high polymerase loading rate; required for nucleolar localization of Rpa34p
Top 10 interactors (score): RPC19 (0.999); RPC40 (0.999); RPB5 (0.999); RPA135 (0.999); RPA190 (0.999); RPO26 (0.999); RPA12 (0.999); RPA34 (0.999); RPA43 (0.999); NOP58 (0.999); RPB10 (0.998); RPB8 (0.997); RPC10 (0.997); RRN3 (0.996); MRT4 (0.994); KRE33 (0.993); RRB1 (0.992); NOP56 (0.992); HAS1 (0.992); BRX1 (0.991)
Homologues (species, bitscore): POLR1E (Homo sapiens, 69.7); Polr1e (Mus musculus, 70.5); polr1e (Danio rerio, 65.1); polr1e (Xenopus tropicalis, 77.0); AT3G13940 (Arabidopsis thaliana, 55.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:175146-176393:- | gene-YNL248C_AKU4011 | rna-NM_001183086.1_AKU4011 | cds-NP_014151.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:79090-80337:- | gene-YNL248C_BG1 | rna-NM_001183086.1_BG1 | cds-NP_014151.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:184953-186200:- | gene-YNL248C_Bruggeman | rna-NM_001183086.1_Bruggeman | cds-NP_014151.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:192248-193495:- | gene-YNL248C_CAT1 | rna-NM_001183086.1_CAT1 | cds-NP_014151.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:175543-176790:- | gene-YNL248C_CBS1585 | rna-NM_001183086.1_CBS1585 | cds-NP_014151.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:170633-171880:- | gene-YNL248C_CBS436 | rna-NM_001183086.1_CBS436 | cds-NP_014151.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:171957-173204:- | gene-YNL248C_CBS6412 | rna-NM_001183086.1_CBS6412 | cds-NP_014151.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:172225-173472:- | gene-YNL248C_CBS6413 | rna-NM_001183086.1_CBS6413 | cds-NP_014151.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:175172-176419:- | gene-YNL248C_CENPK1137D | rna-NM_001183086.1_CENPK1137D | cds-NP_014151.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:172803-174050:- | gene-YNL248C_EthanolRed | rna-NM_001183086.1_EthanolRed | cds-NP_014151.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:167538-168785:- | gene-YNL248C_FaliES1 | rna-NM_001183086.1_FaliES1 | cds-NP_014151.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000082.1:78683-79930:- | gene-YNL248C_JAY291 | rna-NM_001183086.1_JAY291 | cds-NP_014151.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:180736-181983:- | gene-YNL248C_MUCL30387 | rna-NM_001183086.1_MUCL30387 | cds-NP_014151.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:179319-180566:- | gene-YNL248C_MUCL30388 | rna-NM_001183086.1_MUCL30388 | cds-NP_014151.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:173033-174280:- | gene-YNL248C_MUCL39482 | rna-NM_001183086.1_MUCL39482 | cds-NP_014151.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:175292-176539:- | gene-YNL248C_MUCL42920 | rna-NM_001183086.1_MUCL42920 | cds-NP_014151.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:181330-182577:- | gene-YNL248C_NCIM3186 | rna-NM_001183086.1_NCIM3186 | cds-NP_014151.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:175125-176372:- | gene-YNL248C_NCYC1407 | rna-NM_001183086.1_NCYC1407 | cds-NP_014151.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:172026-173273:- | gene-YNL248C_PE2H3 | rna-NM_001183086.1_PE2H3 | cds-NP_014151.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:171414-172661:- | gene-YNL248C_PE2H4 | rna-NM_001183086.1_PE2H4 | cds-NP_014151.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:181361-182608:- | gene-YNL248C_S288C | rna-NM_001183086.1_S288C | cds-NP_014151.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000040.1:69685-70932:+ | gene-YNL248C_SA1 | rna-NM_001183086.1_SA1 | cds-NP_014151.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:168394-169641:- | gene-YNL248C_ThermosaccDry | rna-NM_001183086.1_ThermosaccDry | cds-NP_014151.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:187283-188530:- | gene-YNL248C_VR1 | rna-NM_001183086.1_VR1 | cds-NP_014151.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:78716-79963:- | gene-YNL248C_ZTW1 | rna-NM_001183086.1_ZTW1 | cds-NP_014151.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:178659-179906:- | gene-YNL248C_Sparadoxus | rna-NM_001183086.1_Sparadoxus | cds-NP_014151.1_Sparadoxus | 93.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |