Gene name: RPA34
Reference locus (S288C): YJL148W
Gene biotype: protein_coding
Description: RNA polymerase I subunit A34.5; essential for nucleolar assembly and for high polymerase loading rate; nucleolar localization depends on Rpa49p; Belongs to the eukaryotic RPA34 RNA polymerase subunit family
Top 10 interactors (score): RPC19 (0.999); RPA12 (0.999); RPA43 (0.999); RPA190 (0.999); RPA49 (0.999); RPA135 (0.999); RPO26 (0.999); RPB5 (0.998); RPC40 (0.998); RPB10 (0.996); RPA14 (0.996); RPB8 (0.994); RPC10 (0.991); CBF5 (0.986); NOP58 (0.984); NOP56 (0.976); EBP2 (0.969); RLP24 (0.966); MAK16 (0.965); RPF2 (0.945)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:128732-129433:+ | gene-YJL148W_AKU4011 | rna-NM_001181581.1_AKU4011 | cds-NP_012387.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:484289-484990:- | gene-YJL148W_BG1 | rna-NM_001181581.1_BG1 | cds-NP_012387.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:140567-141268:+ | gene-YJL148W_Bruggeman | rna-NM_001181581.1_Bruggeman | cds-NP_012387.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:144350-145051:+ | gene-YJL148W_CAT1 | rna-NM_001181581.1_CAT1 | cds-NP_012387.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:134365-135066:+ | gene-YJL148W_CBS1585 | rna-NM_001181581.1_CBS1585 | cds-NP_012387.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:159117-159818:+ | gene-YJL148W_CBS436 | rna-NM_001181581.1_CBS436 | cds-NP_012387.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:130774-131475:+ | gene-YJL148W_CBS6412 | rna-NM_001181581.1_CBS6412 | cds-NP_012387.1_CBS6412 | 97.1 | 98.7 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:131838-132539:+ | gene-YJL148W_CBS6413 | rna-NM_001181581.1_CBS6413 | cds-NP_012387.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:122825-123526:+ | gene-YJL148W_CENPK1137D | rna-NM_001181581.1_CENPK1137D | cds-NP_012387.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:132890-133591:+ | gene-YJL148W_EthanolRed | rna-NM_001181581.1_EthanolRed | cds-NP_012387.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:138368-139069:+ | gene-YJL148W_FaliES1 | rna-NM_001181581.1_FaliES1 | cds-NP_012387.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000099.1:19545-20246:+ | gene-YJL148W_JAY291 | rna-NM_001181581.1_JAY291 | cds-NP_012387.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:142836-143537:+ | gene-YJL148W_MUCL30387 | rna-NM_001181581.1_MUCL30387 | cds-NP_012387.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:138870-139589:+ | gene-YJL148W_MUCL30388 | rna-NM_001181581.1_MUCL30388 | cds-NP_012387.1_MUCL30388 | 97.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:133107-133808:+ | gene-YJL148W_MUCL39482 | rna-NM_001181581.1_MUCL39482 | cds-NP_012387.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:138627-139328:+ | gene-YJL148W_MUCL42920 | rna-NM_001181581.1_MUCL42920 | cds-NP_012387.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:140416-141117:+ | gene-YJL148W_NCIM3186 | rna-NM_001181581.1_NCIM3186 | cds-NP_012387.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:131716-132417:+ | gene-YJL148W_NCYC1407 | rna-NM_001181581.1_NCYC1407 | cds-NP_012387.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:144523-145224:+ | gene-YJL148W_PE2H3 | rna-NM_001181581.1_PE2H3 | cds-NP_012387.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:144165-144866:+ | gene-YJL148W_PE2H4 | rna-NM_001181581.1_PE2H4 | cds-NP_012387.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:140437-141138:+ | gene-YJL148W_S288C | rna-NM_001181581.1_S288C | cds-NP_012387.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000022.1:12476-13177:- | gene-YJL148W_SA1 | rna-NM_001181581.1_SA1 | cds-NP_012387.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:131559-132260:+ | gene-YJL148W_ThermosaccDry | rna-NM_001181581.1_ThermosaccDry | cds-NP_012387.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:138640-139341:+ | gene-YJL148W_VR1 | rna-NM_001181581.1_VR1 | cds-NP_012387.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:119001-119702:+ | gene-YJL148W_ZTW1 | rna-NM_001181581.1_ZTW1 | cds-NP_012387.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:144127-144828:+ | gene-YJL148W_Sparadoxus | rna-NM_001181581.1_Sparadoxus | cds-NP_012387.1_Sparadoxus | 89.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |