Gene name: RPA190
Reference locus (S288C): YOR341W
Gene biotype: protein_coding
Description: Dna-directed rna polymerase i core subunit rpa190; RNA polymerase I largest subunit A190; Belongs to the RNA polymerase beta' chain family
Top 10 interactors (score): RPO26 (0.999); RPA34 (0.999); RPA43 (0.999); RPC40 (0.999); RPB5 (0.999); RRN3 (0.999); RPO31 (0.999); RPA12 (0.999); RPA135 (0.999); RPA49 (0.999); RPB8 (0.999); RPC10 (0.999); RPC19 (0.999); RPB10 (0.999); RET1 (0.998); RRP5 (0.997); UTP20 (0.997); NOP58 (0.997); UTP22 (0.996); NOP2 (0.996)
Homologues (species, bitscore): POLR1A (Homo sapiens, 1112.8); Polr1a (Mus musculus, 1110.9); polr1a (Danio rerio, 1072.4); polr1a (Xenopus tropicalis, 1042.7); RpI1 (Drosophila melanogaster, 981.9); Y48E1A.1 (Caenorhabditis elegans, 904.4); NRPA1 (Arabidopsis thaliana, 971.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:951468-956462:+ | gene-YOR341W_AKU4011 | rna-NM_001183761.3_AKU4011 | cds-NP_014986.3_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000087.1:4388-9382:- | gene-YOR341W_BG1 | rna-NM_001183761.3_BG1 | cds-NP_014986.3_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:936864-941858:+ | gene-YOR341W_Bruggeman | rna-NM_001183761.3_Bruggeman | cds-NP_014986.3_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:937604-942598:+ | gene-YOR341W_CAT1 | rna-NM_001183761.3_CAT1 | cds-NP_014986.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:935296-940290:+ | gene-YOR341W_CBS1585 | rna-NM_001183761.3_CBS1585 | cds-NP_014986.3_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:933102-938096:+ | gene-YOR341W_CBS436 | rna-NM_001183761.3_CBS436 | cds-NP_014986.3_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:165695-170689:+ | gene-YOR341W_CBS6412 | rna-NM_001183761.3_CBS6412 | cds-NP_014986.3_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:940149-945143:+ | gene-YOR341W_CBS6413 | rna-NM_001183761.3_CBS6413 | cds-NP_014986.3_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:960770-965764:+ | gene-YOR341W_CENPK1137D | rna-NM_001183761.3_CENPK1137D | cds-NP_014986.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:180331-185325:+ | gene-YOR341W_EthanolRed | rna-NM_001183761.3_EthanolRed | cds-NP_014986.3_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:933003-937997:+ | gene-YOR341W_FaliES1 | rna-NM_001183761.3_FaliES1 | cds-NP_014986.3_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000078.1:65259-70253:- | gene-YOR341W_JAY291 | rna-NM_001183761.3_JAY291 | cds-NP_014986.3_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:941356-946350:+ | gene-YOR341W_MUCL30387 | rna-NM_001183761.3_MUCL30387 | cds-NP_014986.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:949107-954101:+ | gene-YOR341W_MUCL30388 | rna-NM_001183761.3_MUCL30388 | cds-NP_014986.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:941835-946829:+ | gene-YOR341W_MUCL39482 | rna-NM_001183761.3_MUCL39482 | cds-NP_014986.3_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:951297-956291:+ | gene-YOR341W_MUCL42920 | rna-NM_001183761.3_MUCL42920 | cds-NP_014986.3_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:960876-965870:+ | gene-YOR341W_NCIM3186 | rna-NM_001183761.3_NCIM3186 | cds-NP_014986.3_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:942844-947838:+ | gene-YOR341W_NCYC1407 | rna-NM_001183761.3_NCYC1407 | cds-NP_014986.3_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:941087-946081:+ | gene-YOR341W_PE2H3 | rna-NM_001183761.3_PE2H3 | cds-NP_014986.3_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:957439-962433:+ | gene-YOR341W_PE2H4 | rna-NM_001183761.3_PE2H4 | cds-NP_014986.3_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:960987-965981:+ | gene-YOR341W_S288C | rna-NM_001183761.3_S288C | cds-NP_014986.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000016.1:71405-76399:+ | gene-YOR341W_SA1 | rna-NM_001183761.3_SA1 | cds-NP_014986.3_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:932172-937166:+ | gene-YOR341W_ThermosaccDry | rna-NM_001183761.3_ThermosaccDry | cds-NP_014986.3_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:995481-1000475:+ | gene-YOR341W_VR1 | rna-NM_001183761.3_VR1 | cds-NP_014986.3_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:665070-670064:+ | gene-YOR341W_ZTW1 | rna-NM_001183761.3_ZTW1 | cds-NP_014986.3_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:939447-944444:+ | gene-YOR341W_Sparadoxus | rna-NM_001183761.3_Sparadoxus | cds-NP_014986.3_Sparadoxus | 93.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |