Gene name: RPA135
Reference locus (S288C): YPR010C
Gene biotype: protein_coding
Description: Dna-directed rna polymerase i core subunit rpa135; RNA polymerase I second largest subunit A135
Top 10 interactors (score): RPB8 (0.999); RPC19 (0.999); RPB10 (0.999); UTP21 (0.999); RPA43 (0.999); RPA34 (0.999); RPO26 (0.999); RPA190 (0.999); RPC40 (0.999); RPB5 (0.999); RRN3 (0.999); PWP2 (0.999); RPO31 (0.999); HAS1 (0.999); RPA12 (0.999); UTP13 (0.999); RPA49 (0.999); RPC10 (0.999); ERB1 (0.998); NOP58 (0.998)
Homologues (species, bitscore): POLR1B (Homo sapiens, 953.0); Polr1b (Mus musculus, 952.6); polr1b (Danio rerio, 948.0); polr1b (Xenopus tropicalis, 953.4); RpI135 (Drosophila melanogaster, 900.2); F14B4.3 (Caenorhabditis elegans, 882.5); NRPA2 (Arabidopsis thaliana, 839.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:549200-552811:- | gene-YPR010C_AKU4011 | rna-NM_001184107.1_AKU4011 | cds-NP_015335.1_AKU4011 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:344287-347898:+ | gene-YPR010C_BG1 | rna-NM_001184107.1_BG1 | cds-NP_015335.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:626223-629834:- | gene-YPR010C_Bruggeman | rna-NM_001184107.1_Bruggeman | cds-NP_015335.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:670066-673677:- | gene-YPR010C_CAT1 | rna-NM_001184107.1_CAT1 | cds-NP_015335.1_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:552887-556498:- | gene-YPR010C_CBS1585 | rna-NM_001184107.1_CBS1585 | cds-NP_015335.1_CBS1585 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:567308-570919:- | gene-YPR010C_CBS436 | rna-NM_001184107.1_CBS436 | cds-NP_015335.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:556636-560247:- | gene-YPR010C_CBS6412 | rna-NM_001184107.1_CBS6412 | cds-NP_015335.1_CBS6412 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:549347-552958:- | gene-YPR010C_CBS6413 | rna-NM_001184107.1_CBS6413 | cds-NP_015335.1_CBS6413 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:577560-581174:- | gene-YPR010C_CENPK1137D | rna-NM_001184107.1_CENPK1137D | cds-NP_015335.1_CENPK1137D | 97.8 | 99.7 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:547132-550743:- | gene-YPR010C_EthanolRed | rna-NM_001184107.1_EthanolRed | cds-NP_015335.1_EthanolRed | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:554963-558574:- | gene-YPR010C_FaliES1 | rna-NM_001184107.1_FaliES1 | cds-NP_015335.1_FaliES1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000337.1:16807-20418:- | gene-YPR010C_JAY291 | rna-NM_001184107.1_JAY291 | cds-NP_015335.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:567434-571045:- | gene-YPR010C_MUCL30387 | rna-NM_001184107.1_MUCL30387 | cds-NP_015335.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:566535-570146:- | gene-YPR010C_MUCL30388 | rna-NM_001184107.1_MUCL30388 | cds-NP_015335.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:546126-549737:- | gene-YPR010C_MUCL39482 | rna-NM_001184107.1_MUCL39482 | cds-NP_015335.1_MUCL39482 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:606562-610173:- | gene-YPR010C_MUCL42920 | rna-NM_001184107.1_MUCL42920 | cds-NP_015335.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:577568-581179:- | gene-YPR010C_NCIM3186 | rna-NM_001184107.1_NCIM3186 | cds-NP_015335.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:553826-557437:- | gene-YPR010C_NCYC1407 | rna-NM_001184107.1_NCYC1407 | cds-NP_015335.1_NCYC1407 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:560843-564454:- | gene-YPR010C_PE2H3 | rna-NM_001184107.1_PE2H3 | cds-NP_015335.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:560458-564069:- | gene-YPR010C_PE2H4 | rna-NM_001184107.1_PE2H4 | cds-NP_015335.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:577585-581196:- | gene-YPR010C_S288C | rna-NM_001184107.1_S288C | cds-NP_015335.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000026.1:119090-122701:+ | gene-YPR010C_SA1 | rna-NM_001184107.1_SA1 | cds-NP_015335.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:554762-558373:- | gene-YPR010C_ThermosaccDry | rna-NM_001184107.1_ThermosaccDry | cds-NP_015335.1_ThermosaccDry | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:571017-574628:- | gene-YPR010C_VR1 | rna-NM_001184107.1_VR1 | cds-NP_015335.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:554065-557676:- | gene-YPR010C_ZTW1 | rna-NM_001184107.1_ZTW1 | cds-NP_015335.1_ZTW1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:554215-557826:- | gene-YPR010C_Sparadoxus | rna-NM_001184107.1_Sparadoxus | cds-NP_015335.1_Sparadoxus | 92.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |