Gene name: RPA12
Reference locus (S288C): YJR063W
Gene biotype: protein_coding
Description: RNA polymerase I subunit A12.2; contains two zinc binding domains, and the N terminal domain is responsible for anchoring to the RNA pol I complex; physically interacts with transcriptional activator Msn4p, to regulate transcription of AYR1, a gene involved in lipid metabolism; Belongs to the archaeal RpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family
Top 10 interactors (score): RPB10 (0.999); RPA34 (0.999); RPA43 (0.999); RPA190 (0.999); RPO26 (0.999); RPA14 (0.999); RPC40 (0.999); RPB5 (0.999); RPA135 (0.999); RPA49 (0.999); RPC19 (0.999); DST1 (0.999); RPC10 (0.999); RPB8 (0.999); RPC11 (0.994); EMG1 (0.993); MRT4 (0.992); NIP7 (0.991); SPT5 (0.99); RRS1 (0.989)
Homologues (species, bitscore): ZNRD1 (Homo sapiens, 73.6); Znrd1 (Mus musculus, 71.2); znrd1 (Danio rerio, 67.0); RpI12 (Drosophila melanogaster, 73.6); C15H11.8 (Caenorhabditis elegans, 56.2); AT3G25940 (Arabidopsis thaliana, 54.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:526721-527098:+ | gene-YJR063W_AKU4011 | rna-NM_001181721.1_AKU4011 | cds-NP_012597.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:80524-80901:- | gene-YJR063W_BG1 | rna-NM_001181721.1_BG1 | cds-NP_012597.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:540231-540608:+ | gene-YJR063W_Bruggeman | rna-NM_001181721.1_Bruggeman | cds-NP_012597.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:544541-544918:+ | gene-YJR063W_CAT1 | rna-NM_001181721.1_CAT1 | cds-NP_012597.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:538785-539162:+ | gene-YJR063W_CBS1585 | rna-NM_001181721.1_CBS1585 | cds-NP_012597.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:556857-557234:+ | gene-YJR063W_CBS436 | rna-NM_001181721.1_CBS436 | cds-NP_012597.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:525934-526311:+ | gene-YJR063W_CBS6412 | rna-NM_001181721.1_CBS6412 | cds-NP_012597.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:528232-528609:+ | gene-YJR063W_CBS6413 | rna-NM_001181721.1_CBS6413 | cds-NP_012597.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:537555-537932:+ | gene-YJR063W_CENPK1137D | rna-NM_001181721.1_CENPK1137D | cds-NP_012597.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:531115-531492:+ | gene-YJR063W_EthanolRed | rna-NM_001181721.1_EthanolRed | cds-NP_012597.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:542581-542958:+ | gene-YJR063W_FaliES1 | rna-NM_001181721.1_FaliES1 | cds-NP_012597.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000054.1:146432-146809:- | gene-YJR063W_JAY291 | rna-NM_001181721.1_JAY291 | cds-NP_012597.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:540767-541144:+ | gene-YJR063W_MUCL30387 | rna-NM_001181721.1_MUCL30387 | cds-NP_012597.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:538053-538430:+ | gene-YJR063W_MUCL30388 | rna-NM_001181721.1_MUCL30388 | cds-NP_012597.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:532247-532624:+ | gene-YJR063W_MUCL39482 | rna-NM_001181721.1_MUCL39482 | cds-NP_012597.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:536484-536861:+ | gene-YJR063W_MUCL42920 | rna-NM_001181721.1_MUCL42920 | cds-NP_012597.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:555174-555551:+ | gene-YJR063W_NCIM3186 | rna-NM_001181721.1_NCIM3186 | cds-NP_012597.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:529811-530188:+ | gene-YJR063W_NCYC1407 | rna-NM_001181721.1_NCYC1407 | cds-NP_012597.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:547704-548081:+ | gene-YJR063W_PE2H3 | rna-NM_001181721.1_PE2H3 | cds-NP_012597.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:541400-541777:+ | gene-YJR063W_PE2H4 | rna-NM_001181721.1_PE2H4 | cds-NP_012597.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:555195-555572:+ | gene-YJR063W_S288C | rna-NM_001181721.1_S288C | cds-NP_012597.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000038.1:13770-14147:+ | gene-YJR063W_SA1 | rna-NM_001181721.1_SA1 | cds-NP_012597.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:536513-536890:+ | gene-YJR063W_ThermosaccDry | rna-NM_001181721.1_ThermosaccDry | cds-NP_012597.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:538390-538767:+ | gene-YJR063W_VR1 | rna-NM_001181721.1_VR1 | cds-NP_012597.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:515908-516285:+ | gene-YJR063W_ZTW1 | rna-NM_001181721.1_ZTW1 | cds-NP_012597.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:549263-549640:+ | gene-YJR063W_Sparadoxus | rna-NM_001181721.1_Sparadoxus | cds-NP_012597.1_Sparadoxus | 94.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |