Gene name: ROX3
Reference locus (S288C): YBL093C
Gene biotype: protein_coding
Description: Mediator of rna polymerase ii transcription subunit 19, fungi type; Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme
Top 10 interactors (score): MED7 (0.999); NUT2 (0.999); SRB5 (0.999); CSE2 (0.999); SRB7 (0.998); MED6 (0.998); MED8 (0.998); RGR1 (0.998); SRB4 (0.998); SRB6 (0.996); SIN4 (0.996); PGD1 (0.995); GAL11 (0.994); SRB2 (0.993); SOH1 (0.993); MED11 (0.993); MED4 (0.992); MED1 (0.986); MED2 (0.983); NUT1 (0.975)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:37802-38464:- | gene-YBL093C_AKU4011 | rna-NM_001178333.1_AKU4011 | cds-NP_009459.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:28497-29159:- | gene-YBL093C_BG1 | rna-NM_001178333.1_BG1 | cds-NP_009459.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:38428-39090:- | gene-YBL093C_Bruggeman | rna-NM_001178333.1_Bruggeman | cds-NP_009459.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:40355-41017:- | gene-YBL093C_CAT1 | rna-NM_001178333.1_CAT1 | cds-NP_009459.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:29884-30546:- | gene-YBL093C_CBS1585 | rna-NM_001178333.1_CBS1585 | cds-NP_009459.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:38688-39350:- | gene-YBL093C_CBS436 | rna-NM_001178333.1_CBS436 | cds-NP_009459.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:29674-30336:- | gene-YBL093C_CBS6412 | rna-NM_001178333.1_CBS6412 | cds-NP_009459.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:35961-36623:- | gene-YBL093C_CBS6413 | rna-NM_001178333.1_CBS6413 | cds-NP_009459.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:37911-38573:- | gene-YBL093C_CENPK1137D | rna-NM_001178333.1_CENPK1137D | cds-NP_009459.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:52052-52714:- | gene-YBL093C_EthanolRed | rna-NM_001178333.1_EthanolRed | cds-NP_009459.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:52182-52844:- | gene-YBL093C_FaliES1 | rna-NM_001178333.1_FaliES1 | cds-NP_009459.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000184.1:29220-29882:- | gene-YBL093C_JAY291 | rna-NM_001178333.1_JAY291 | cds-NP_009459.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:37570-38232:- | gene-YBL093C_MUCL30387 | rna-NM_001178333.1_MUCL30387 | cds-NP_009459.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:38241-38903:- | gene-YBL093C_MUCL30388 | rna-NM_001178333.1_MUCL30388 | cds-NP_009459.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:30034-30696:- | gene-YBL093C_MUCL39482 | rna-NM_001178333.1_MUCL39482 | cds-NP_009459.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:36910-37572:- | gene-YBL093C_MUCL42920 | rna-NM_001178333.1_MUCL42920 | cds-NP_009459.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:44053-44715:- | gene-YBL093C_NCIM3186 | rna-NM_001178333.1_NCIM3186 | cds-NP_009459.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:31710-32372:- | gene-YBL093C_NCYC1407 | rna-NM_001178333.1_NCYC1407 | cds-NP_009459.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:38017-38679:- | gene-YBL093C_PE2H3 | rna-NM_001178333.1_PE2H3 | cds-NP_009459.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:35659-36321:- | gene-YBL093C_PE2H4 | rna-NM_001178333.1_PE2H4 | cds-NP_009459.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:44256-44918:- | gene-YBL093C_S288C | rna-NM_001178333.1_S288C | cds-NP_009459.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:28361-29023:- | gene-YBL093C_SA1 | rna-NM_001178333.1_SA1 | cds-NP_009459.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:52142-52804:- | gene-YBL093C_ThermosaccDry | rna-NM_001178333.1_ThermosaccDry | cds-NP_009459.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:34345-35007:- | gene-YBL093C_VR1 | rna-NM_001178333.1_VR1 | cds-NP_009459.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:29369-30031:- | gene-YBL093C_ZTW1 | rna-NM_001178333.1_ZTW1 | cds-NP_009459.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:64101-64769:- | gene-YBL093C_Sparadoxus | rna-NM_001178333.1_Sparadoxus | cds-NP_009459.1_Sparadoxus | 92.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |