Gene name: RNY1
Reference locus (S288C): YPL123C
Gene biotype: protein_coding
Description: Ribonuclease T2-like; Vacuolar RNase of the T(2) family; relocalizes to the cytosol where it cleaves tRNAs upon oxidative or stationary phase stress; required for tRNA-specific translational pausing suring oxidative stress; promotes apoptosis under stress conditions and this function is independent of Rny1p catalytic activity
Top 10 interactors (score): YBR056W (0.857); DCS2 (0.857); TFS1 (0.835); SOL4 (0.812); UIP4 (0.811); GAD1 (0.804); YLR345W (0.787); YKL091C (0.772); DCS1 (0.769); RAT1 (0.758); NNR1 (0.735); SYM1 (0.733); GGA1 (0.732); VPS68 (0.728); STF2 (0.721); YHI9 (0.715); YJL120W (0.71); YBR139W (0.684); XRN1 (0.672); YJL144W (0.664)
Homologues (species, bitscore): RNASET2 (Homo sapiens, 57.4); Rnaset2a (Mus musculus, 59.7); rnaset2 (Xenopus tropicalis, 55.1); RNS1 (Arabidopsis thaliana, 61.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:295282-296586:- | gene-YPL123C_AKU4011 | rna-NM_001183937.1_AKU4011 | cds-NP_015202.1_AKU4011 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:501039-502343:- | gene-YPL123C_BG1 | rna-NM_001183937.1_BG1 | cds-NP_015202.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:321286-322590:- | gene-YPL123C_Bruggeman | rna-NM_001183937.1_Bruggeman | cds-NP_015202.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:317954-319258:- | gene-YPL123C_CAT1 | rna-NM_001183937.1_CAT1 | cds-NP_015202.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:299355-300659:- | gene-YPL123C_CBS1585 | rna-NM_001183937.1_CBS1585 | cds-NP_015202.1_CBS1585 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:314029-315333:- | gene-YPL123C_CBS436 | rna-NM_001183937.1_CBS436 | cds-NP_015202.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:304024-305328:- | gene-YPL123C_CBS6412 | rna-NM_001183937.1_CBS6412 | cds-NP_015202.1_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:295991-297295:- | gene-YPL123C_CBS6413 | rna-NM_001183937.1_CBS6413 | cds-NP_015202.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:317574-318878:- | gene-YPL123C_CENPK1137D | rna-NM_001183937.1_CENPK1137D | cds-NP_015202.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:293971-295275:- | gene-YPL123C_EthanolRed | rna-NM_001183937.1_EthanolRed | cds-NP_015202.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:301563-302867:- | gene-YPL123C_FaliES1 | rna-NM_001183937.1_FaliES1 | cds-NP_015202.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000007.1:62950-64254:+ | gene-YPL123C_JAY291 | rna-NM_001183937.1_JAY291 | cds-NP_015202.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:312525-313829:- | gene-YPL123C_MUCL30387 | rna-NM_001183937.1_MUCL30387 | cds-NP_015202.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:310546-311850:- | gene-YPL123C_MUCL30388 | rna-NM_001183937.1_MUCL30388 | cds-NP_015202.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:292684-293988:- | gene-YPL123C_MUCL39482 | rna-NM_001183937.1_MUCL39482 | cds-NP_015202.1_MUCL39482 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:349927-351231:- | gene-YPL123C_MUCL42920 | rna-NM_001183937.1_MUCL42920 | cds-NP_015202.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:317624-318928:- | gene-YPL123C_NCIM3186 | rna-NM_001183937.1_NCIM3186 | cds-NP_015202.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:299137-300441:- | gene-YPL123C_NCYC1407 | rna-NM_001183937.1_NCYC1407 | cds-NP_015202.1_NCYC1407 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:306628-307932:- | gene-YPL123C_PE2H3 | rna-NM_001183937.1_PE2H3 | cds-NP_015202.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:306251-307555:- | gene-YPL123C_PE2H4 | rna-NM_001183937.1_PE2H4 | cds-NP_015202.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:317641-318945:- | gene-YPL123C_S288C | rna-NM_001183937.1_S288C | cds-NP_015202.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000012.1:54735-56039:+ | gene-YPL123C_SA1 | rna-NM_001183937.1_SA1 | cds-NP_015202.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:301361-302665:- | gene-YPL123C_ThermosaccDry | rna-NM_001183937.1_ThermosaccDry | cds-NP_015202.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:316340-317644:- | gene-YPL123C_VR1 | rna-NM_001183937.1_VR1 | cds-NP_015202.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:300686-301990:- | gene-YPL123C_ZTW1 | rna-NM_001183937.1_ZTW1 | cds-NP_015202.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:302422-303726:- | gene-YPL123C_Sparadoxus | rna-NM_001183937.1_Sparadoxus | cds-NP_015202.1_Sparadoxus | 88.6 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |