Gene name: RNT1
Reference locus (S288C): YMR239C
Gene biotype: protein_coding
Description: Ribonuclease 3; Nuclear dsRNA-specific ribonuclease (RNase III); involved in rDNA transcription, rRNA processing and U2 snRNA 3' end formation by cleavage of a stem-loop structure at the 3' end of U2 snRNA; involved in polyadenylation-independent transcription termination; involved in the cell wall stress response, regulating the degradation of cell wall integrity and morphogenesis checkpoint genes
Top 10 interactors (score): DBP2 (0.999); DBP3 (0.998); SEN1 (0.992); PRP43 (0.989); RAT1 (0.986); REX4 (0.971); RRP6 (0.967); DHR2 (0.964); DBP8 (0.952); XRN1 (0.939); HCA4 (0.938); DBP9 (0.938); NOG2 (0.937); MAK5 (0.934); UTP23 (0.934); NAB3 (0.925); RIX1 (0.923); MSN5 (0.921); NOP4 (0.92); CIC1 (0.916)
Homologues (species, bitscore): DROSHA (Homo sapiens, 57.8); Drosha (Mus musculus, 57.8); rnasen (Danio rerio, 57.0); drosha (Xenopus tropicalis, 57.0); drosha (Drosophila melanogaster, 55.1); drsh-1 (Caenorhabditis elegans, 63.2); DCL3 (Arabidopsis thaliana, 54.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:788170-789585:- | gene-YMR239C_AKU4011 | rna-NM_001182746.1_AKU4011 | cds-NP_013966.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:165007-166422:+ | gene-YMR239C_BG1 | rna-NM_001182746.1_BG1 | cds-NP_013966.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:732395-733810:- | gene-YMR239C_Bruggeman | rna-NM_001182746.1_Bruggeman | cds-NP_013966.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:736288-737703:- | gene-YMR239C_CAT1 | rna-NM_001182746.1_CAT1 | cds-NP_013966.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:720429-721844:- | gene-YMR239C_CBS1585 | rna-NM_001182746.1_CBS1585 | cds-NP_013966.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:724697-726112:- | gene-YMR239C_CBS436 | rna-NM_001182746.1_CBS436 | cds-NP_013966.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:831991-833406:- | gene-YMR239C_CBS6412 | rna-NM_001182746.1_CBS6412 | cds-NP_013966.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:719582-720997:- | gene-YMR239C_CBS6413 | rna-NM_001182746.1_CBS6413 | cds-NP_013966.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:743005-744420:- | gene-YMR239C_CENPK1137D | rna-NM_001182746.1_CENPK1137D | cds-NP_013966.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:780831-782246:- | gene-YMR239C_EthanolRed | rna-NM_001182746.1_EthanolRed | cds-NP_013966.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:726855-728270:- | gene-YMR239C_FaliES1 | rna-NM_001182746.1_FaliES1 | cds-NP_013966.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000141.1:58317-59732:+ | gene-YMR239C_JAY291 | rna-NM_001182746.1_JAY291 | cds-NP_013966.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:726179-727594:- | gene-YMR239C_MUCL30387 | rna-NM_001182746.1_MUCL30387 | cds-NP_013966.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:733406-734821:- | gene-YMR239C_MUCL30388 | rna-NM_001182746.1_MUCL30388 | cds-NP_013966.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:721499-722914:- | gene-YMR239C_MUCL39482 | rna-NM_001182746.1_MUCL39482 | cds-NP_013966.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:728843-730258:- | gene-YMR239C_MUCL42920 | rna-NM_001182746.1_MUCL42920 | cds-NP_013966.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:748216-749631:- | gene-YMR239C_NCIM3186 | rna-NM_001182746.1_NCIM3186 | cds-NP_013966.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:721156-722571:- | gene-YMR239C_NCYC1407 | rna-NM_001182746.1_NCYC1407 | cds-NP_013966.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:731035-732450:- | gene-YMR239C_PE2H3 | rna-NM_001182746.1_PE2H3 | cds-NP_013966.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:732053-733468:- | gene-YMR239C_PE2H4 | rna-NM_001182746.1_PE2H4 | cds-NP_013966.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:748262-749677:- | gene-YMR239C_S288C | rna-NM_001182746.1_S288C | cds-NP_013966.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:58431-59846:+ | gene-YMR239C_SA1 | rna-NM_001182746.1_SA1 | cds-NP_013966.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:723026-724441:- | gene-YMR239C_ThermosaccDry | rna-NM_001182746.1_ThermosaccDry | cds-NP_013966.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:735570-736985:- | gene-YMR239C_VR1 | rna-NM_001182746.1_VR1 | cds-NP_013966.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:138161-139576:- | gene-YMR239C_ZTW1 | rna-NM_001182746.1_ZTW1 | cds-NP_013966.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:740826-742241:- | gene-YMR239C_Sparadoxus | rna-NM_001182746.1_Sparadoxus | cds-NP_013966.1_Sparadoxus | 90.0 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |