Gene name: RNQ1
Reference locus (S288C): YCL028W
Gene biotype: protein_coding
Description: Prion domain-containing protein rnq1; [PIN(+)] prion; an infectious protein conformation that is generally an ordered protein aggregate
Top 10 interactors (score): SIS1 (0.995); SUP35 (0.995); YDJ1 (0.975); URE2 (0.959); HSP104 (0.953); SWI1 (0.919); NEW1 (0.913); ADE1 (0.897); SSA1 (0.895); MOT3 (0.84); MOD5 (0.816); LSM4 (0.813); SUP45 (0.813); MCA1 (0.796); CYC8 (0.771); URA3 (0.762); TAH1 (0.752); GCD7 (0.744); HSP42 (0.718); CUP1-2 (0.718)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:71513-72730:+ | gene-YCL028W_AKU4011 | rna-NM_001178673.1_AKU4011 | cds-NP_009902.2_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000178.1:74382-75599:- | gene-YCL028W_BG1 | rna-NM_001178673.1_BG1 | cds-NP_009902.2_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:59703-60920:+ | gene-YCL028W_Bruggeman | rna-NM_001178673.1_Bruggeman | cds-NP_009902.2_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:71311-72534:+ | gene-YCL028W_CAT1 | rna-NM_001178673.1_CAT1 | cds-NP_009902.2_CAT1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:72202-73378:+ | gene-YCL028W_CBS1585 | rna-NM_001178673.1_CBS1585 | cds-NP_009902.2_CBS1585 | 95.8 | 96.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:70644-71861:+ | gene-YCL028W_CBS436 | rna-NM_001178673.1_CBS436 | cds-NP_009902.2_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:59610-60827:+ | gene-YCL028W_CBS6412 | rna-NM_001178673.1_CBS6412 | cds-NP_009902.2_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:70978-72195:+ | gene-YCL028W_CBS6413 | rna-NM_001178673.1_CBS6413 | cds-NP_009902.2_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:69747-70964:+ | gene-YCL028W_CENPK1137D | rna-NM_001178673.1_CENPK1137D | cds-NP_009902.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:69536-70747:+ | gene-YCL028W_EthanolRed | rna-NM_001178673.1_EthanolRed | cds-NP_009902.2_EthanolRed | 98.5 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:70478-71707:+ | gene-YCL028W_FaliES1 | rna-NM_001178673.1_FaliES1 | cds-NP_009902.2_FaliES1 | 98.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000225.1:12715-13908:- | gene-YCL028W_JAY291 | rna-NM_001178673.1_JAY291 | cds-NP_009902.2_JAY291 | 97.6 | 98.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:57894-59099:+ | gene-YCL028W_MUCL30387 | rna-NM_001178673.1_MUCL30387 | cds-NP_009902.2_MUCL30387 | 98.8 | 99.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:58168-59385:+ | gene-YCL028W_MUCL30388 | rna-NM_001178673.1_MUCL30388 | cds-NP_009902.2_MUCL30388 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:72571-73794:+ | gene-YCL028W_MUCL39482 | rna-NM_001178673.1_MUCL39482 | cds-NP_009902.2_MUCL39482 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:58684-59907:+ | gene-YCL028W_MUCL42920 | rna-NM_001178673.1_MUCL42920 | cds-NP_009902.2_MUCL42920 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:69782-70999:+ | gene-YCL028W_NCIM3186 | rna-NM_001178673.1_NCIM3186 | cds-NP_009902.2_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:73061-74278:+ | gene-YCL028W_NCYC1407 | rna-NM_001178673.1_NCYC1407 | cds-NP_009902.2_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:70603-71796:+ | gene-YCL028W_PE2H3 | rna-NM_001178673.1_PE2H3 | cds-NP_009902.2_PE2H3 | 97.6 | 98.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:70560-71753:+ | gene-YCL028W_PE2H4 | rna-NM_001178673.1_PE2H4 | cds-NP_009902.2_PE2H4 | 97.6 | 98.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:70150-71367:+ | gene-YCL028W_S288C | rna-NM_001178673.1_S288C | cds-NP_009902.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000061.1:57287-58498:+ | gene-YCL028W_SA1 | rna-NM_001178673.1_SA1 | cds-NP_009902.2_SA1 | 98.6 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:70797-72008:+ | gene-YCL028W_ThermosaccDry | rna-NM_001178673.1_ThermosaccDry | cds-NP_009902.2_ThermosaccDry | 98.5 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:77093-78286:+ | gene-YCL028W_VR1 | rna-NM_001178673.1_VR1 | cds-NP_009902.2_VR1 | 97.6 | 98.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:70992-72203:+ | gene-YCL028W_ZTW1 | rna-NM_001178673.1_ZTW1 | cds-NP_009902.2_ZTW1 | 98.7 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:100504-101700:+ | gene-YCL028W_Sparadoxus | rna-NM_001178673.1_Sparadoxus | cds-NP_009902.2_Sparadoxus | 89.3 | 97.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |