Gene name: RNP1
Reference locus (S288C): YLL046C
Gene biotype: protein_coding
Description: Ribonucleoprotein that contains two RNA recognition motifs (RRM); RNP1 has a paralog, SBP1, that arose from the whole genome duplication
Top 10 interactors (score): NAB3 (0.698); PCI8 (0.671); TIF35 (0.499); TIF34 (0.487)
Homologues (species, bitscore): rbm14a (Danio rerio, 50.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:33879-34628:- | gene-YLL046C_AKU4011 | rna-NM_001181866.1_AKU4011 | cds-NP_013054.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000104.1:1388-2137:+ | gene-YLL046C_BG1 | rna-NM_001181866.1_BG1 | cds-NP_013054.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:43223-43972:- | gene-YLL046C_Bruggeman | rna-NM_001181866.1_Bruggeman | cds-NP_013054.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:44745-45494:- | gene-YLL046C_CAT1 | rna-NM_001181866.1_CAT1 | cds-NP_013054.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:41790-42539:- | gene-YLL046C_CBS1585 | rna-NM_001181866.1_CBS1585 | cds-NP_013054.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:31783-32532:- | gene-YLL046C_CBS436 | rna-NM_001181866.1_CBS436 | cds-NP_013054.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:41450-42199:- | gene-YLL046C_CBS6412 | rna-NM_001181866.1_CBS6412 | cds-NP_013054.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:41593-42342:- | gene-YLL046C_CBS6413 | rna-NM_001181866.1_CBS6413 | cds-NP_013054.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:31697-32446:- | gene-YLL046C_CENPK1137D | rna-NM_001181866.1_CENPK1137D | cds-NP_013054.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:34505-35254:- | gene-YLL046C_EthanolRed | rna-NM_001181866.1_EthanolRed | cds-NP_013054.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:33826-34575:- | gene-YLL046C_FaliES1 | rna-NM_001181866.1_FaliES1 | cds-NP_013054.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000073.1:32908-33657:- | gene-YLL046C_JAY291 | rna-NM_001181866.1_JAY291 | cds-NP_013054.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:41532-42281:- | gene-YLL046C_MUCL30387 | rna-NM_001181866.1_MUCL30387 | cds-NP_013054.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:45534-46283:- | gene-YLL046C_MUCL30388 | rna-NM_001181866.1_MUCL30388 | cds-NP_013054.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:41791-42540:- | gene-YLL046C_MUCL39482 | rna-NM_001181866.1_MUCL39482 | cds-NP_013054.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:42091-42840:- | gene-YLL046C_MUCL42920 | rna-NM_001181866.1_MUCL42920 | cds-NP_013054.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:46688-47437:- | gene-YLL046C_NCIM3186 | rna-NM_001181866.1_NCIM3186 | cds-NP_013054.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:33669-34418:- | gene-YLL046C_NCYC1407 | rna-NM_001181866.1_NCYC1407 | cds-NP_013054.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:40332-41081:- | gene-YLL046C_PE2H3 | rna-NM_001181866.1_PE2H3 | cds-NP_013054.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:40138-40887:- | gene-YLL046C_PE2H4 | rna-NM_001181866.1_PE2H4 | cds-NP_013054.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:46714-47463:- | gene-YLL046C_S288C | rna-NM_001181866.1_S288C | cds-NP_013054.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000047.1:39952-40701:- | gene-YLL046C_SA1 | rna-NM_001181866.1_SA1 | cds-NP_013054.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:34330-35079:- | gene-YLL046C_ThermosaccDry | rna-NM_001181866.1_ThermosaccDry | cds-NP_013054.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:47915-48664:- | gene-YLL046C_VR1 | rna-NM_001181866.1_VR1 | cds-NP_013054.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:33648-34398:- | gene-YLL046C_ZTW1 | rna-NM_001181866.1_ZTW1 | cds-NP_013054.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:42091-42840:- | gene-YLL046C_Sparadoxus | rna-NM_001181866.1_Sparadoxus | cds-NP_013054.1_Sparadoxus | 87.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |