RNP1 (YLL046C)

Gene profile

Gene name: RNP1
Reference locus (S288C): YLL046C
Gene biotype: protein_coding

Description: Ribonucleoprotein that contains two RNA recognition motifs (RRM); RNP1 has a paralog, SBP1, that arose from the whole genome duplication

Top 10 interactors (score): NAB3 (0.698); PCI8 (0.671); TIF35 (0.499); TIF34 (0.487)

Homologues (species, bitscore): rbm14a (Danio rerio, 50.8)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005306.1:33879-34628:- gene-YLL046C_AKU4011 rna-NM_001181866.1_AKU4011 cds-NP_013054.1_AKU4011 99.4 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000104.1:1388-2137:+ gene-YLL046C_BG1 rna-NM_001181866.1_BG1 cds-NP_013054.1_BG1 100.0 100.0 Verified 1 1 1 True True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005514.1:43223-43972:- gene-YLL046C_Bruggeman rna-NM_001181866.1_Bruggeman cds-NP_013054.1_Bruggeman 99.7 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005530.1:44745-45494:- gene-YLL046C_CAT1 rna-NM_001181866.1_CAT1 cds-NP_013054.1_CAT1 99.7 100.0 Verified 1 1 1 True True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005370.1:41790-42539:- gene-YLL046C_CBS1585 rna-NM_001181866.1_CBS1585 cds-NP_013054.1_CBS1585 99.4 100.0 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005354.1:31783-32532:- gene-YLL046C_CBS436 rna-NM_001181866.1_CBS436 cds-NP_013054.1_CBS436 100.0 100.0 Mismatch 1 1 1 True True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005338.1:41450-42199:- gene-YLL046C_CBS6412 rna-NM_001181866.1_CBS6412 cds-NP_013054.1_CBS6412 99.6 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005322.1:41593-42342:- gene-YLL046C_CBS6413 rna-NM_001181866.1_CBS6413 cds-NP_013054.1_CBS6413 99.4 100.0 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001533.1:31697-32446:- gene-YLL046C_CENPK1137D rna-NM_001181866.1_CENPK1137D cds-NP_013054.1_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005482.1:34505-35254:- gene-YLL046C_EthanolRed rna-NM_001181866.1_EthanolRed cds-NP_013054.1_EthanolRed 99.4 100.0 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005546.1:33826-34575:- gene-YLL046C_FaliES1 rna-NM_001181866.1_FaliES1 cds-NP_013054.1_FaliES1 99.4 100.0 Verified 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000073.1:32908-33657:- gene-YLL046C_JAY291 rna-NM_001181866.1_JAY291 cds-NP_013054.1_JAY291 100.0 100.0 Verified 1 1 1 True True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005418.1:41532-42281:- gene-YLL046C_MUCL30387 rna-NM_001181866.1_MUCL30387 cds-NP_013054.1_MUCL30387 99.7 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005450.1:45534-46283:- gene-YLL046C_MUCL30388 rna-NM_001181866.1_MUCL30388 cds-NP_013054.1_MUCL30388 99.4 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005290.1:41791-42540:- gene-YLL046C_MUCL39482 rna-NM_001181866.1_MUCL39482 cds-NP_013054.1_MUCL39482 99.4 100.0 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005434.1:42091-42840:- gene-YLL046C_MUCL42920 rna-NM_001181866.1_MUCL42920 cds-NP_013054.1_MUCL42920 100.0 100.0 Verified 1 1 1 True True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011821.1:46688-47437:- gene-YLL046C_NCIM3186 rna-NM_001181866.1_NCIM3186 cds-NP_013054.1_NCIM3186 99.4 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005274.1:33669-34418:- gene-YLL046C_NCYC1407 rna-NM_001181866.1_NCYC1407 cds-NP_013054.1_NCYC1407 99.6 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994151.1:40332-41081:- gene-YLL046C_PE2H3 rna-NM_001181866.1_PE2H3 cds-NP_013054.1_PE2H3 100.0 100.0 Verified 1 1 1 True True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999883.1:40138-40887:- gene-YLL046C_PE2H4 rna-NM_001181866.1_PE2H4 cds-NP_013054.1_PE2H4 99.7 100.0 Verified 1 1 1 True True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001144.5:46714-47463:- gene-YLL046C_S288C rna-NM_001181866.1_S288C cds-NP_013054.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000047.1:39952-40701:- gene-YLL046C_SA1 rna-NM_001181866.1_SA1 cds-NP_013054.1_SA1 99.8 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005498.1:34330-35079:- gene-YLL046C_ThermosaccDry rna-NM_001181866.1_ThermosaccDry cds-NP_013054.1_ThermosaccDry 99.4 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005466.1:47915-48664:- gene-YLL046C_VR1 rna-NM_001181866.1_VR1 cds-NP_013054.1_VR1 100.0 100.0 Verified 1 1 1 True True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000023.1:33648-34398:- gene-YLL046C_ZTW1 rna-NM_001181866.1_ZTW1 cds-NP_013054.1_ZTW1 99.4 100.0 Verified 1 1 0 False False False True False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047498.1:42091-42840:- gene-YLL046C_Sparadoxus rna-NM_001181866.1_Sparadoxus cds-NP_013054.1_Sparadoxus 87.2 100.0 Verified 1 1 1 False True False False False

Additional files