Gene name: RNH70
Reference locus (S288C): YGR276C
Gene biotype: protein_coding
Description: RNA exonuclease 1; 3'-5' exoribonuclease; required for maturation of 3' ends of 5S rRNA and tRNA-Arg3 from dicistronic transcripts
Top 10 interactors (score): REX2 (0.99); RRP6 (0.92); DIS3 (0.913); REX3 (0.893); LRP1 (0.892); YGR273C (0.866); NGL1 (0.835); GCD10 (0.825); NGL3 (0.821); NGL2 (0.807); TRZ1 (0.803); RRP40 (0.728); RNH1 (0.727); LHP1 (0.723); GCD14 (0.723); RRP42 (0.662); PAN3 (0.653); SKI6 (0.645); MTR4 (0.631); LOS1 (0.629)
Homologues (species, bitscore): REXO1 (Homo sapiens, 134.4); Gm7104 (Mus musculus, 138.7); rexo1 (Danio rerio, 152.1); rexo1 (Xenopus tropicalis, 154.1); CG42666 (Drosophila melanogaster, 148.7); C05C8.5 (Caenorhabditis elegans, 127.5); AT5G25800 (Arabidopsis thaliana, 174.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:1009238-1010899:- | gene-YGR276C_AKU4011 | rna-NM_001181405.1_AKU4011 | cds-NP_011792.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000010.1:36-1697:- | gene-YGR276C_BG1 | rna-NM_001181405.1_BG1 | cds-NP_011792.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:1017757-1019418:- | gene-YGR276C_Bruggeman | rna-NM_001181405.1_Bruggeman | cds-NP_011792.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:1017237-1018898:- | gene-YGR276C_CAT1 | rna-NM_001181405.1_CAT1 | cds-NP_011792.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:1012106-1013767:- | gene-YGR276C_CBS1585 | rna-NM_001181405.1_CBS1585 | cds-NP_011792.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:1015742-1017403:- | gene-YGR276C_CBS436 | rna-NM_001181405.1_CBS436 | cds-NP_011792.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:1002998-1004659:- | gene-YGR276C_CBS6412 | rna-NM_001181405.1_CBS6412 | cds-NP_011792.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:1009051-1010712:- | gene-YGR276C_CBS6413 | rna-NM_001181405.1_CBS6413 | cds-NP_011792.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:1043550-1045211:- | gene-YGR276C_CENPK1137D | rna-NM_001181405.1_CENPK1137D | cds-NP_011792.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:997087-998748:- | gene-YGR276C_EthanolRed | rna-NM_001181405.1_EthanolRed | cds-NP_011792.1_EthanolRed | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:1001893-1003554:- | gene-YGR276C_FaliES1 | rna-NM_001181405.1_FaliES1 | cds-NP_011792.1_FaliES1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000076.1:26761-28422:+ | gene-YGR276C_JAY291 | rna-NM_001181405.1_JAY291 | cds-NP_011792.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:1015498-1017159:- | gene-YGR276C_MUCL30387 | rna-NM_001181405.1_MUCL30387 | cds-NP_011792.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:1013630-1015291:- | gene-YGR276C_MUCL30388 | rna-NM_001181405.1_MUCL30388 | cds-NP_011792.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:1007212-1008873:- | gene-YGR276C_MUCL39482 | rna-NM_001181405.1_MUCL39482 | cds-NP_011792.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:1025093-1026754:- | gene-YGR276C_MUCL42920 | rna-NM_001181405.1_MUCL42920 | cds-NP_011792.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:1043819-1045480:- | gene-YGR276C_NCIM3186 | rna-NM_001181405.1_NCIM3186 | cds-NP_011792.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:1002843-1004504:- | gene-YGR276C_NCYC1407 | rna-NM_001181405.1_NCYC1407 | cds-NP_011792.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:1028046-1029707:- | gene-YGR276C_PE2H3 | rna-NM_001181405.1_PE2H3 | cds-NP_011792.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:1032885-1034546:- | gene-YGR276C_PE2H4 | rna-NM_001181405.1_PE2H4 | cds-NP_011792.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:1043819-1045480:- | gene-YGR276C_S288C | rna-NM_001181405.1_S288C | cds-NP_011792.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000063.1:42041-43702:- | gene-YGR276C_SA1 | rna-NM_001181405.1_SA1 | cds-NP_011792.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:1022413-1024074:- | gene-YGR276C_ThermosaccDry | rna-NM_001181405.1_ThermosaccDry | cds-NP_011792.1_ThermosaccDry | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:1128217-1129878:- | gene-YGR276C_VR1 | rna-NM_001181405.1_VR1 | cds-NP_011792.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:323818-325479:- | gene-YGR276C_ZTW1 | rna-NM_001181405.1_ZTW1 | cds-NP_011792.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:1014513-1016171:- | gene-YGR276C_Sparadoxus | rna-NM_001181405.1_Sparadoxus | cds-NP_011792.1_Sparadoxus | 88.5 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |