Gene name: RNH201
Reference locus (S288C): YNL072W
Gene biotype: protein_coding
Description: Ribonuclease H2 catalytic subunit; removes RNA primers during Okazaki fragment synthesis and errant ribonucleotides misincorporated during DNA replication; role in ribonucleotide excision repair; homolog of RNAse HI; related to human AGS4 which causes Aicardi-Goutieres syndrome
Top 10 interactors (score): RNH1 (0.999); RNH202 (0.999); RNH203 (0.997); POL2 (0.996); RAD27 (0.994); TOP1 (0.993); POL30 (0.963); POL3 (0.96); PRI1 (0.954); SGS1 (0.952); CDC21 (0.946); DUT1 (0.944); MSH2 (0.939); POL1 (0.936); RAD52 (0.934); RFC5 (0.929); RFC4 (0.928); RFC2 (0.925); EXO1 (0.921); CSM3 (0.905)
Homologues (species, bitscore): RNASEH2A (Homo sapiens, 184.1); Rnaseh2a (Mus musculus, 191.4); rnaseh2a (Danio rerio, 190.3); rnaseh2a (Xenopus tropicalis, 177.9); CG13690 (Drosophila melanogaster, 171.4); rnh-2 (Caenorhabditis elegans, 182.2); AT2G25100 (Arabidopsis thaliana, 199.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:483987-484910:+ | gene-YNL072W_AKU4011 | rna-NM_001182910.1_AKU4011 | cds-NP_014327.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:388006-388929:+ | gene-YNL072W_BG1 | rna-NM_001182910.1_BG1 | cds-NP_014327.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:494713-495636:+ | gene-YNL072W_Bruggeman | rna-NM_001182910.1_Bruggeman | cds-NP_014327.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:537713-538636:+ | gene-YNL072W_CAT1 | rna-NM_001182910.1_CAT1 | cds-NP_014327.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:484655-485578:+ | gene-YNL072W_CBS1585 | rna-NM_001182910.1_CBS1585 | cds-NP_014327.1_CBS1585 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:553070-553993:+ | gene-YNL072W_CBS436 | rna-NM_001182910.1_CBS436 | cds-NP_014327.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:479749-480672:+ | gene-YNL072W_CBS6412 | rna-NM_001182910.1_CBS6412 | cds-NP_014327.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:481065-481988:+ | gene-YNL072W_CBS6413 | rna-NM_001182910.1_CBS6413 | cds-NP_014327.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:484141-485064:+ | gene-YNL072W_CENPK1137D | rna-NM_001182910.1_CENPK1137D | cds-NP_014327.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:486806-487729:+ | gene-YNL072W_EthanolRed | rna-NM_001182910.1_EthanolRed | cds-NP_014327.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:477331-478254:+ | gene-YNL072W_FaliES1 | rna-NM_001182910.1_FaliES1 | cds-NP_014327.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000001.1:3768-4691:+ | gene-YNL072W_JAY291 | rna-NM_001182910.1_JAY291 | cds-NP_014327.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:490876-491799:+ | gene-YNL072W_MUCL30387 | rna-NM_001182910.1_MUCL30387 | cds-NP_014327.1_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:526275-527198:+ | gene-YNL072W_MUCL30388 | rna-NM_001182910.1_MUCL30388 | cds-NP_014327.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:482057-482980:+ | gene-YNL072W_MUCL39482 | rna-NM_001182910.1_MUCL39482 | cds-NP_014327.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:485985-486908:+ | gene-YNL072W_MUCL42920 | rna-NM_001182910.1_MUCL42920 | cds-NP_014327.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:490286-491209:+ | gene-YNL072W_NCIM3186 | rna-NM_001182910.1_NCIM3186 | cds-NP_014327.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:484109-485032:+ | gene-YNL072W_NCYC1407 | rna-NM_001182910.1_NCYC1407 | cds-NP_014327.1_NCYC1407 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:487345-488268:+ | gene-YNL072W_PE2H3 | rna-NM_001182910.1_PE2H3 | cds-NP_014327.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:482420-483343:+ | gene-YNL072W_PE2H4 | rna-NM_001182910.1_PE2H4 | cds-NP_014327.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:490317-491240:+ | gene-YNL072W_S288C | rna-NM_001182910.1_S288C | cds-NP_014327.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000024.1:75272-76195:+ | gene-YNL072W_SA1 | rna-NM_001182910.1_SA1 | cds-NP_014327.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:478206-479129:+ | gene-YNL072W_ThermosaccDry | rna-NM_001182910.1_ThermosaccDry | cds-NP_014327.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:497324-498247:+ | gene-YNL072W_VR1 | rna-NM_001182910.1_VR1 | cds-NP_014327.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:387556-388479:+ | gene-YNL072W_ZTW1 | rna-NM_001182910.1_ZTW1 | cds-NP_014327.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:493762-494685:+ | gene-YNL072W_Sparadoxus | rna-NM_001182910.1_Sparadoxus | cds-NP_014327.1_Sparadoxus | 89.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |