Gene name: RNH1
Reference locus (S288C): YMR234W
Gene biotype: protein_coding
Description: Ribonuclease H1; able to bind double-stranded RNAs and RNA-DNA hybrids; associates with RNAse polymerase I
Top 10 interactors (score): RNH201 (0.999); POL2 (0.894); RRM3 (0.865); RAD52 (0.855); RNH202 (0.826); TOP1 (0.812); HPR1 (0.808); PIF1 (0.788); RAD27 (0.772); VAS1 (0.767); RAT1 (0.733); RNH70 (0.727); EXO1 (0.718); MIP1 (0.705); PRP28 (0.704); RFA1 (0.701); REX3 (0.681); RFA3 (0.678); SEN1 (0.676); YJR084W (0.662)
Homologues (species, bitscore): RNASEH1 (Homo sapiens, 75.1); Rnaseh1 (Mus musculus, 73.6); rnaseh1 (Danio rerio, 88.6); rnaseh1 (Xenopus tropicalis, 85.5); rnh1 (Drosophila melanogaster, 89.7); rnh-1.0 (Caenorhabditis elegans, 88.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:780174-781220:+ | gene-YMR234W_AKU4011 | rna-NM_001182741.1_AKU4011 | cds-NP_013961.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:173372-174418:- | gene-YMR234W_BG1 | rna-NM_001182741.1_BG1 | cds-NP_013961.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:724399-725445:+ | gene-YMR234W_Bruggeman | rna-NM_001182741.1_Bruggeman | cds-NP_013961.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:728292-729338:+ | gene-YMR234W_CAT1 | rna-NM_001182741.1_CAT1 | cds-NP_013961.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:712433-713479:+ | gene-YMR234W_CBS1585 | rna-NM_001182741.1_CBS1585 | cds-NP_013961.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:716701-717747:+ | gene-YMR234W_CBS436 | rna-NM_001182741.1_CBS436 | cds-NP_013961.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:823995-825041:+ | gene-YMR234W_CBS6412 | rna-NM_001182741.1_CBS6412 | cds-NP_013961.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:711586-712632:+ | gene-YMR234W_CBS6413 | rna-NM_001182741.1_CBS6413 | cds-NP_013961.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:735009-736055:+ | gene-YMR234W_CENPK1137D | rna-NM_001182741.1_CENPK1137D | cds-NP_013961.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:772639-773685:+ | gene-YMR234W_EthanolRed | rna-NM_001182741.1_EthanolRed | cds-NP_013961.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:718291-719337:+ | gene-YMR234W_FaliES1 | rna-NM_001182741.1_FaliES1 | cds-NP_013961.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000141.1:66682-67727:- | gene-YMR234W_JAY291 | rna-NM_001182741.1_JAY291 | cds-NP_013961.1_JAY291 | 99.9 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:718183-719229:+ | gene-YMR234W_MUCL30387 | rna-NM_001182741.1_MUCL30387 | cds-NP_013961.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:725410-726456:+ | gene-YMR234W_MUCL30388 | rna-NM_001182741.1_MUCL30388 | cds-NP_013961.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:713503-714549:+ | gene-YMR234W_MUCL39482 | rna-NM_001182741.1_MUCL39482 | cds-NP_013961.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:720847-721893:+ | gene-YMR234W_MUCL42920 | rna-NM_001182741.1_MUCL42920 | cds-NP_013961.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:740220-741266:+ | gene-YMR234W_NCIM3186 | rna-NM_001182741.1_NCIM3186 | cds-NP_013961.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:713160-714206:+ | gene-YMR234W_NCYC1407 | rna-NM_001182741.1_NCYC1407 | cds-NP_013961.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:723039-724085:+ | gene-YMR234W_PE2H3 | rna-NM_001182741.1_PE2H3 | cds-NP_013961.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:724057-725103:+ | gene-YMR234W_PE2H4 | rna-NM_001182741.1_PE2H4 | cds-NP_013961.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:740266-741312:+ | gene-YMR234W_S288C | rna-NM_001182741.1_S288C | cds-NP_013961.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:66796-67842:- | gene-YMR234W_SA1 | rna-NM_001182741.1_SA1 | cds-NP_013961.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:714462-715508:+ | gene-YMR234W_ThermosaccDry | rna-NM_001182741.1_ThermosaccDry | cds-NP_013961.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:727574-728620:+ | gene-YMR234W_VR1 | rna-NM_001182741.1_VR1 | cds-NP_013961.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:130165-131211:+ | gene-YMR234W_ZTW1 | rna-NM_001182741.1_ZTW1 | cds-NP_013961.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:732334-733383:+ | gene-YMR234W_Sparadoxus | rna-NM_001182741.1_Sparadoxus | cds-NP_013961.1_Sparadoxus | 87.4 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |