Gene name: RNA15
Reference locus (S288C): YGL044C
Gene biotype: protein_coding
Description: mRNA 3'-end-processing protein RNA15; Component of the cleavage and polyadenylation factor I (CF I); CF 1, composed of the CF 1A complex (Rna14p, Rna15p, Clp1p, Pcf11p) and Hrp1, is involved in cleavage and polyadenylation of mRNA 3' ends; interacts with the A-rich polyadenylation signal in complex with Rna14p and Hrp1p; mutant displays reduced transcription elongation in the G-less-based run-on (GLRO) assay; required for gene looping and maintenance of genome stability
Top 10 interactors (score): CLP1 (0.999); YTH1 (0.999); CFT1 (0.999); PCF11 (0.999); CFT2 (0.999); TFC4 (0.999); YSH1 (0.999); RNA14 (0.999); PAP1 (0.999); PTA1 (0.999); HRP1 (0.998); SYC1 (0.998); SSU72 (0.994); PFS2 (0.987); MPE1 (0.986); FIP1 (0.985); SWD2 (0.958); PTI1 (0.951); GLC7 (0.937); REF2 (0.935)
Homologues (species, bitscore): CSTF2 (Homo sapiens, 87.0); Cstf2 (Mus musculus, 87.0); cstf2 (Danio rerio, 82.0); cstf2 (Xenopus tropicalis, 86.3); CstF-64 (Drosophila melanogaster, 95.5); cpf-2 (Caenorhabditis elegans, 85.5); CSTF64 (Arabidopsis thaliana, 90.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:418215-419105:- | gene-YGL044C_AKU4011 | rna-NM_001180909.1_AKU4011 | cds-NP_011471.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000060.1:157025-157912:+ | gene-YGL044C_BG1 | rna-NM_001180909.1_BG1 | cds-NP_011471.1_BG1 | 99.4 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:419038-419928:- | gene-YGL044C_Bruggeman | rna-NM_001180909.1_Bruggeman | cds-NP_011471.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:417201-418088:- | gene-YGL044C_CAT1 | rna-NM_001180909.1_CAT1 | cds-NP_011471.1_CAT1 | 99.3 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:419678-420568:- | gene-YGL044C_CBS1585 | rna-NM_001180909.1_CBS1585 | cds-NP_011471.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:413820-414707:- | gene-YGL044C_CBS436 | rna-NM_001180909.1_CBS436 | cds-NP_011471.1_CBS436 | 99.4 | 99.6 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:412350-413240:- | gene-YGL044C_CBS6412 | rna-NM_001180909.1_CBS6412 | cds-NP_011471.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:416395-417285:- | gene-YGL044C_CBS6413 | rna-NM_001180909.1_CBS6413 | cds-NP_011471.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:415987-416877:- | gene-YGL044C_CENPK1137D | rna-NM_001180909.1_CENPK1137D | cds-NP_011471.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:406597-407487:- | gene-YGL044C_EthanolRed | rna-NM_001180909.1_EthanolRed | cds-NP_011471.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:409859-410749:- | gene-YGL044C_FaliES1 | rna-NM_001180909.1_FaliES1 | cds-NP_011471.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000165.1:6082-6972:+ | gene-YGL044C_JAY291 | rna-NM_001180909.1_JAY291 | cds-NP_011471.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:415994-416884:- | gene-YGL044C_MUCL30387 | rna-NM_001180909.1_MUCL30387 | cds-NP_011471.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:419038-419928:- | gene-YGL044C_MUCL30388 | rna-NM_001180909.1_MUCL30388 | cds-NP_011471.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:415472-416362:- | gene-YGL044C_MUCL39482 | rna-NM_001180909.1_MUCL39482 | cds-NP_011471.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:423894-424781:- | gene-YGL044C_MUCL42920 | rna-NM_001180909.1_MUCL42920 | cds-NP_011471.1_MUCL42920 | 99.5 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:416146-417036:- | gene-YGL044C_NCIM3186 | rna-NM_001180909.1_NCIM3186 | cds-NP_011471.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:409599-410489:- | gene-YGL044C_NCYC1407 | rna-NM_001180909.1_NCYC1407 | cds-NP_011471.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:412175-413065:- | gene-YGL044C_PE2H3 | rna-NM_001180909.1_PE2H3 | cds-NP_011471.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:417225-418115:- | gene-YGL044C_PE2H4 | rna-NM_001180909.1_PE2H4 | cds-NP_011471.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:416146-417036:- | gene-YGL044C_S288C | rna-NM_001180909.1_S288C | cds-NP_011471.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000021.1:138592-139482:+ | gene-YGL044C_SA1 | rna-NM_001180909.1_SA1 | cds-NP_011471.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:429223-430113:- | gene-YGL044C_ThermosaccDry | rna-NM_001180909.1_ThermosaccDry | cds-NP_011471.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:519165-520052:- | gene-YGL044C_VR1 | rna-NM_001180909.1_VR1 | cds-NP_011471.1_VR1 | 99.3 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:407798-408688:- | gene-YGL044C_ZTW1 | rna-NM_001180909.1_ZTW1 | cds-NP_011471.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:417408-418310:- | gene-YGL044C_Sparadoxus | rna-NM_001180909.1_Sparadoxus | cds-NP_011471.1_Sparadoxus | 92.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |