Gene name: RNA1
Reference locus (S288C): YMR235C
Gene biotype: protein_coding
Description: GTPase activating protein (GAP) for Gsp1p; involved in nuclear transport; Belongs to the RNA1 family
Top 10 interactors (score): SMT3 (0.999); SRM1 (0.999); YRB1 (0.999); GSP1 (0.999); UBC9 (0.999); KAP95 (0.998); CRM1 (0.996); NUP2 (0.994); NTF2 (0.994); MEX67 (0.993); ULP1 (0.993); SRP1 (0.986); GSP2 (0.984); NSP1 (0.971); YRB2 (0.97); NUP159 (0.965); PRP2 (0.962); MSN5 (0.95); PRP3 (0.947); PRP4 (0.931)
Homologues (species, bitscore): RANGAP1 (Homo sapiens, 154.5); Rangap1 (Mus musculus, 149.8); rangap1a (Danio rerio, 170.2); rangap1 (Xenopus tropicalis, 128.3); RanGAP (Drosophila melanogaster, 139.0); ran-2 (Caenorhabditis elegans, 127.1); RANGAP1 (Arabidopsis thaliana, 77.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:781420-782643:- | gene-YMR235C_AKU4011 | rna-NM_001182742.1_AKU4011 | cds-NP_013962.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:171949-173172:+ | gene-YMR235C_BG1 | rna-NM_001182742.1_BG1 | cds-NP_013962.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:725645-726868:- | gene-YMR235C_Bruggeman | rna-NM_001182742.1_Bruggeman | cds-NP_013962.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:729538-730761:- | gene-YMR235C_CAT1 | rna-NM_001182742.1_CAT1 | cds-NP_013962.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:713679-714902:- | gene-YMR235C_CBS1585 | rna-NM_001182742.1_CBS1585 | cds-NP_013962.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:717947-719170:- | gene-YMR235C_CBS436 | rna-NM_001182742.1_CBS436 | cds-NP_013962.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:825241-826464:- | gene-YMR235C_CBS6412 | rna-NM_001182742.1_CBS6412 | cds-NP_013962.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:712832-714055:- | gene-YMR235C_CBS6413 | rna-NM_001182742.1_CBS6413 | cds-NP_013962.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:736255-737478:- | gene-YMR235C_CENPK1137D | rna-NM_001182742.1_CENPK1137D | cds-NP_013962.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:773885-775108:- | gene-YMR235C_EthanolRed | rna-NM_001182742.1_EthanolRed | cds-NP_013962.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:719537-720760:- | gene-YMR235C_FaliES1 | rna-NM_001182742.1_FaliES1 | cds-NP_013962.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000141.1:65259-66482:+ | gene-YMR235C_JAY291 | rna-NM_001182742.1_JAY291 | cds-NP_013962.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:719429-720652:- | gene-YMR235C_MUCL30387 | rna-NM_001182742.1_MUCL30387 | cds-NP_013962.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:726656-727879:- | gene-YMR235C_MUCL30388 | rna-NM_001182742.1_MUCL30388 | cds-NP_013962.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:714749-715972:- | gene-YMR235C_MUCL39482 | rna-NM_001182742.1_MUCL39482 | cds-NP_013962.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:722093-723316:- | gene-YMR235C_MUCL42920 | rna-NM_001182742.1_MUCL42920 | cds-NP_013962.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:741466-742689:- | gene-YMR235C_NCIM3186 | rna-NM_001182742.1_NCIM3186 | cds-NP_013962.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:714406-715629:- | gene-YMR235C_NCYC1407 | rna-NM_001182742.1_NCYC1407 | cds-NP_013962.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:724285-725508:- | gene-YMR235C_PE2H3 | rna-NM_001182742.1_PE2H3 | cds-NP_013962.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:725303-726526:- | gene-YMR235C_PE2H4 | rna-NM_001182742.1_PE2H4 | cds-NP_013962.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:741512-742735:- | gene-YMR235C_S288C | rna-NM_001182742.1_S288C | cds-NP_013962.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:65373-66596:+ | gene-YMR235C_SA1 | rna-NM_001182742.1_SA1 | cds-NP_013962.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:715708-716931:- | gene-YMR235C_ThermosaccDry | rna-NM_001182742.1_ThermosaccDry | cds-NP_013962.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:728820-730043:- | gene-YMR235C_VR1 | rna-NM_001182742.1_VR1 | cds-NP_013962.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:131411-132634:- | gene-YMR235C_ZTW1 | rna-NM_001182742.1_ZTW1 | cds-NP_013962.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:733598-734815:- | gene-YMR235C_Sparadoxus | rna-NM_001182742.1_Sparadoxus | cds-NP_013962.1_Sparadoxus | 90.7 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |