RMI1 (YPL024W)


Gene profile

Gene name: RMI1
Reference locus (S288C): YPL024W
Gene biotype: protein_coding

Description: RecQ-mediated genome instability protein 1; Subunit of the RecQ (Sgs1p) - Topo III (Top3p) complex; stimulates superhelical relaxing, DNA catenation/decatenation and ssDNA binding activities of Top3p; involved in response to DNA damage; functions in S phase-mediated cohesion establishment via a pathway involving the Ctf18-RFC complex and Mrc1p; stimulates Top3p DNA catenation/decatenation activity; null mutants display increased rates of recombination and delayed S phase

Top 10 interactors (score): MUS81 (0.999); SGS1 (0.999); TOP3 (0.999); RAD1 (0.996); DNA2 (0.996); MPH1 (0.995); RAD51 (0.994); SLX1 (0.984); SRS2 (0.982); EXO1 (0.976); MMS4 (0.975); RAD52 (0.961); YEN1 (0.952); RFA1 (0.93); MLH1 (0.93); RAD54 (0.928); SMC5 (0.925); SPO11 (0.924); MEC1 (0.92); SLX4 (0.92)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005310.1:475007-475732:+ gene-YPL024W_AKU4011 rna-NM_001183838.1_AKU4011 cds-NP_015301.1_AKU4011 100.0 100.0 Verified 1 1 1 True True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000091.1:421614-422339:- gene-YPL024W_BG1 rna-NM_001183838.1_BG1 cds-NP_015301.1_BG1 99.8 100.0 Verified 1 1 1 True True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005518.1:551956-552681:+ gene-YPL024W_Bruggeman rna-NM_001183838.1_Bruggeman cds-NP_015301.1_Bruggeman 99.8 100.0 Verified 1 1 1 True True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005534.1:591620-592345:+ gene-YPL024W_CAT1 rna-NM_001183838.1_CAT1 cds-NP_015301.1_CAT1 99.8 100.0 Verified 1 1 1 True True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005374.1:479077-479802:+ gene-YPL024W_CBS1585 rna-NM_001183838.1_CBS1585 cds-NP_015301.1_CBS1585 99.8 100.0 Verified 1 1 1 True True False False False
CBS436 GCA_001738355.1 Sake Asia CM005358.1:493206-493931:+ gene-YPL024W_CBS436 rna-NM_001183838.1_CBS436 cds-NP_015301.1_CBS436 99.8 100.0 Mismatch 1 1 1 True True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005342.1:483270-483995:+ gene-YPL024W_CBS6412 rna-NM_001183838.1_CBS6412 cds-NP_015301.1_CBS6412 99.8 100.0 Mismatch 1 1 1 True True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005326.1:475630-476355:+ gene-YPL024W_CBS6413 rna-NM_001183838.1_CBS6413 cds-NP_015301.1_CBS6413 99.8 100.0 Verified 1 1 1 True True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001537.1:503492-504217:+ gene-YPL024W_CENPK1137D rna-NM_001183838.1_CENPK1137D cds-NP_015301.1_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005486.1:473370-474095:+ gene-YPL024W_EthanolRed rna-NM_001183838.1_EthanolRed cds-NP_015301.1_EthanolRed 100.0 100.0 Verified 1 1 1 True True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005550.1:481200-481925:+ gene-YPL024W_FaliES1 rna-NM_001183838.1_FaliES1 cds-NP_015301.1_FaliES1 100.0 100.0 Verified 1 1 1 True True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000283.1:89803-90528:+ gene-YPL024W_JAY291 rna-NM_001183838.1_JAY291 cds-NP_015301.1_JAY291 99.7 100.0 Verified 1 1 1 True True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005422.1:492904-493629:+ gene-YPL024W_MUCL30387 rna-NM_001183838.1_MUCL30387 cds-NP_015301.1_MUCL30387 99.8 100.0 Verified 1 1 1 True True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005454.1:492012-492737:+ gene-YPL024W_MUCL30388 rna-NM_001183838.1_MUCL30388 cds-NP_015301.1_MUCL30388 99.8 100.0 Verified 1 1 1 True True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005294.1:472394-473119:+ gene-YPL024W_MUCL39482 rna-NM_001183838.1_MUCL39482 cds-NP_015301.1_MUCL39482 99.8 100.0 Verified 1 1 1 True True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005438.1:531524-532249:+ gene-YPL024W_MUCL42920 rna-NM_001183838.1_MUCL42920 cds-NP_015301.1_MUCL42920 99.8 100.0 Verified 1 1 1 True True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011825.1:503500-504225:+ gene-YPL024W_NCIM3186 rna-NM_001183838.1_NCIM3186 cds-NP_015301.1_NCIM3186 99.7 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005278.1:479673-480398:+ gene-YPL024W_NCYC1407 rna-NM_001183838.1_NCYC1407 cds-NP_015301.1_NCYC1407 99.8 100.0 Verified 1 1 1 True True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994155.1:486330-487055:+ gene-YPL024W_PE2H3 rna-NM_001183838.1_PE2H3 cds-NP_015301.1_PE2H3 99.8 100.0 Verified 1 1 1 True True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999887.1:485945-486670:+ gene-YPL024W_PE2H4 rna-NM_001183838.1_PE2H4 cds-NP_015301.1_PE2H4 99.8 100.0 Verified 1 1 1 True True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001148.4:503517-504242:+ gene-YPL024W_S288C rna-NM_001183838.1_S288C cds-NP_015301.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000076.1:195-920:+ gene-YPL024W_SA1 rna-NM_001183838.1_SA1 cds-NP_015301.1_SA1 99.8 100.0 Verified 1 1 1 True True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005502.1:480999-481724:+ gene-YPL024W_ThermosaccDry rna-NM_001183838.1_ThermosaccDry cds-NP_015301.1_ThermosaccDry 100.0 100.0 Verified 1 1 1 True True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005470.1:495887-496612:+ gene-YPL024W_VR1 rna-NM_001183838.1_VR1 cds-NP_015301.1_VR1 99.8 100.0 Verified 1 1 1 True True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000033.1:480289-481014:+ gene-YPL024W_ZTW1 rna-NM_001183838.1_ZTW1 cds-NP_015301.1_ZTW1 100.0 100.0 Verified 1 1 1 True True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047502.1:480219-480944:+ gene-YPL024W_Sparadoxus rna-NM_001183838.1_Sparadoxus cds-NP_015301.1_Sparadoxus 91.0 100.0 Verified 1 1 1 False True False False False

Additional files