Gene name: RLP7
Reference locus (S288C): YNL002C
Gene biotype: protein_coding
Description: Ribosome biogenesis protein RLP7; Nucleolar protein similar to large ribosomal subunit L7 proteins; constituent of 66S pre-ribosomal particles; plays an essential role in processing of precursors to the large ribosomal subunit RNAs; binds junction of ITS2 and ITS2-proximal stem between the 3' end of 5.8S rRNA and the 5' end of 25S rRNA
Top 10 interactors (score): RPS3 (0.999); RPS2 (0.999); MAK16 (0.999); NOC2 (0.999); BRX1 (0.999); RPL30 (0.999); RPL19B (0.999); RPL39 (0.999); RPL34A (0.999); BUD20 (0.999); RPL32 (0.999); RPL2A (0.999); RPS13 (0.999); RPL3 (0.999); RPP0 (0.999); CIC1 (0.999); NOP4 (0.999); NOG1 (0.999); TIF6 (0.999); RPL17A (0.999)
Homologues (species, bitscore): RPL7 (Homo sapiens, 113.2); Rpl7 (Mus musculus, 112.1); rpl7 (Danio rerio, 119.0); rpl7 (Xenopus tropicalis, 118.6); RpL7-like (Drosophila melanogaster, 114.8); rpl-7 (Caenorhabditis elegans, 116.7); AT2G44120 (Arabidopsis thaliana, 122.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:609265-610233:- | gene-YNL002C_AKU4011 | rna-NM_001182841.3_AKU4011 | cds-NP_014396.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:511690-512658:- | gene-YNL002C_BG1 | rna-NM_001182841.3_BG1 | cds-NP_014396.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:626079-627047:- | gene-YNL002C_Bruggeman | rna-NM_001182841.3_Bruggeman | cds-NP_014396.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:661462-662430:- | gene-YNL002C_CAT1 | rna-NM_001182841.3_CAT1 | cds-NP_014396.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:614962-615930:- | gene-YNL002C_CBS1585 | rna-NM_001182841.3_CBS1585 | cds-NP_014396.3_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:676993-677961:- | gene-YNL002C_CBS436 | rna-NM_001182841.3_CBS436 | cds-NP_014396.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:604770-605738:- | gene-YNL002C_CBS6412 | rna-NM_001182841.3_CBS6412 | cds-NP_014396.3_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:605933-606901:- | gene-YNL002C_CBS6413 | rna-NM_001182841.3_CBS6413 | cds-NP_014396.3_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:619824-620792:- | gene-YNL002C_CENPK1137D | rna-NM_001182841.3_CENPK1137D | cds-NP_014396.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:611332-612300:- | gene-YNL002C_EthanolRed | rna-NM_001182841.3_EthanolRed | cds-NP_014396.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:602101-603069:- | gene-YNL002C_FaliES1 | rna-NM_001182841.3_FaliES1 | cds-NP_014396.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000008.1:4915-5883:+ | gene-YNL002C_JAY291 | rna-NM_001182841.3_JAY291 | cds-NP_014396.3_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:624168-625136:- | gene-YNL002C_MUCL30387 | rna-NM_001182841.3_MUCL30387 | cds-NP_014396.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:664998-665966:- | gene-YNL002C_MUCL30388 | rna-NM_001182841.3_MUCL30388 | cds-NP_014396.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:606470-607438:- | gene-YNL002C_MUCL39482 | rna-NM_001182841.3_MUCL39482 | cds-NP_014396.3_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:610262-611230:- | gene-YNL002C_MUCL42920 | rna-NM_001182841.3_MUCL42920 | cds-NP_014396.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:626143-627111:- | gene-YNL002C_NCIM3186 | rna-NM_001182841.3_NCIM3186 | cds-NP_014396.3_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:608723-609691:- | gene-YNL002C_NCYC1407 | rna-NM_001182841.3_NCYC1407 | cds-NP_014396.3_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:610640-611608:- | gene-YNL002C_PE2H3 | rna-NM_001182841.3_PE2H3 | cds-NP_014396.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:611958-612926:- | gene-YNL002C_PE2H4 | rna-NM_001182841.3_PE2H4 | cds-NP_014396.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:626174-627142:- | gene-YNL002C_S288C | rna-NM_001182841.3_S288C | cds-NP_014396.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000068.1:23865-24833:- | gene-YNL002C_SA1 | rna-NM_001182841.3_SA1 | cds-NP_014396.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:602441-603409:- | gene-YNL002C_ThermosaccDry | rna-NM_001182841.3_ThermosaccDry | cds-NP_014396.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:644985-645953:- | gene-YNL002C_VR1 | rna-NM_001182841.3_VR1 | cds-NP_014396.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:511255-512223:- | gene-YNL002C_ZTW1 | rna-NM_001182841.3_ZTW1 | cds-NP_014396.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:617462-618430:- | gene-YNL002C_Sparadoxus | rna-NM_001182841.3_Sparadoxus | cds-NP_014396.3_Sparadoxus | 91.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |