Gene name: RLP24
Reference locus (S288C): YLR009W
Gene biotype: protein_coding
Description: Atpase-activating ribosome biosynthesis protein; Essential protein required for ribosomal large subunit biogenesis; associated with pre-60S ribosomal subunits; stimulates the ATPase activity of Afg2p, which is required for release of Rlp24p from the pre-60S particle; has similarity to Rpl24Ap and Rpl24Bp
Top 10 interactors (score): RPL27B (0.999); DBP3 (0.999); RPL35A (0.999); PUF6 (0.999); RLP7 (0.999); NOG1 (0.999); RSA4 (0.999); RPL17A (0.999); BRX1 (0.999); RPL2A (0.999); DBP10 (0.999); SDA1 (0.999); RRP15 (0.999); RPL19B (0.999); RPL34A (0.999); BUD20 (0.999); RPL3 (0.999); NMD3 (0.999); NOC2 (0.999); MAK16 (0.999)
Homologues (species, bitscore): RSL24D1 (Homo sapiens, 178.3); Rsl24d1 (Mus musculus, 179.9); rsl24d1 (Danio rerio, 175.3); rsl24d1 (Xenopus tropicalis, 154.5); RpL24-like (Drosophila melanogaster, 167.2); rpl-24.2 (Caenorhabditis elegans, 129.4); AT2G44860 (Arabidopsis thaliana, 154.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:154518-155117:+ | gene-YLR009W_AKU4011 | rna-NM_001181896.1_AKU4011 | cds-NP_013109.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:117724-118323:+ | gene-YLR009W_BG1 | rna-NM_001181896.1_BG1 | cds-NP_013109.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:164888-165487:+ | gene-YLR009W_Bruggeman | rna-NM_001181896.1_Bruggeman | cds-NP_013109.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:165207-165806:+ | gene-YLR009W_CAT1 | rna-NM_001181896.1_CAT1 | cds-NP_013109.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:162116-162715:+ | gene-YLR009W_CBS1585 | rna-NM_001181896.1_CBS1585 | cds-NP_013109.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:152740-153339:+ | gene-YLR009W_CBS436 | rna-NM_001181896.1_CBS436 | cds-NP_013109.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:160887-161486:+ | gene-YLR009W_CBS6412 | rna-NM_001181896.1_CBS6412 | cds-NP_013109.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:162383-162982:+ | gene-YLR009W_CBS6413 | rna-NM_001181896.1_CBS6413 | cds-NP_013109.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:151799-152398:+ | gene-YLR009W_CENPK1137D | rna-NM_001181896.1_CENPK1137D | cds-NP_013109.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:154538-155137:+ | gene-YLR009W_EthanolRed | rna-NM_001181896.1_EthanolRed | cds-NP_013109.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:154109-154708:+ | gene-YLR009W_FaliES1 | rna-NM_001181896.1_FaliES1 | cds-NP_013109.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000083.1:889-1488:- | gene-YLR009W_JAY291 | rna-NM_001181896.1_JAY291 | cds-NP_013109.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:162244-162843:+ | gene-YLR009W_MUCL30387 | rna-NM_001181896.1_MUCL30387 | cds-NP_013109.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:167941-168540:+ | gene-YLR009W_MUCL30388 | rna-NM_001181896.1_MUCL30388 | cds-NP_013109.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:162588-163187:+ | gene-YLR009W_MUCL39482 | rna-NM_001181896.1_MUCL39482 | cds-NP_013109.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:162513-163112:+ | gene-YLR009W_MUCL42920 | rna-NM_001181896.1_MUCL42920 | cds-NP_013109.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:166511-167110:+ | gene-YLR009W_NCIM3186 | rna-NM_001181896.1_NCIM3186 | cds-NP_013109.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:154191-154790:+ | gene-YLR009W_NCYC1407 | rna-NM_001181896.1_NCYC1407 | cds-NP_013109.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:160534-161133:+ | gene-YLR009W_PE2H3 | rna-NM_001181896.1_PE2H3 | cds-NP_013109.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:160275-160874:+ | gene-YLR009W_PE2H4 | rna-NM_001181896.1_PE2H4 | cds-NP_013109.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:166537-167136:+ | gene-YLR009W_S288C | rna-NM_001181896.1_S288C | cds-NP_013109.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000062.1:69733-70332:+ | gene-YLR009W_SA1 | rna-NM_001181896.1_SA1 | cds-NP_013109.1_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:154612-155211:+ | gene-YLR009W_ThermosaccDry | rna-NM_001181896.1_ThermosaccDry | cds-NP_013109.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:167987-168586:+ | gene-YLR009W_VR1 | rna-NM_001181896.1_VR1 | cds-NP_013109.1_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:153943-154542:+ | gene-YLR009W_ZTW1 | rna-NM_001181896.1_ZTW1 | cds-NP_013109.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:162540-163142:+ | gene-YLR009W_Sparadoxus | rna-NM_001181896.1_Sparadoxus | cds-NP_013109.1_Sparadoxus | 94.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |