Gene name: RLM1
Reference locus (S288C): YPL089C
Gene biotype: protein_coding
Description: MADS-box transcription factor; component of the protein kinase C-mediated MAP kinase pathway involved in the maintenance of cell integrity; phosphorylated and activated by the MAP-kinase Slt2p; RLM1 has a paralog, SMP1, that arose from the whole genome duplication
Top 10 interactors (score): SLT2 (0.999); KDX1 (0.995); SWI4 (0.977); SEC4 (0.963); HOG1 (0.959); SMI1 (0.945); SWI6 (0.931); MKK1 (0.925); FKS1 (0.918); SDP1 (0.916); PKC1 (0.915); BCK1 (0.909); HDA1 (0.88); RHO1 (0.874); MID2 (0.864); MKK2 (0.863); GSC2 (0.861); SLG1 (0.855); CRZ1 (0.835); KSS1 (0.831)
Homologues (species, bitscore): BORCS8-MEF2B (Homo sapiens, 95.9); Mef2d (Mus musculus, 94.7); mef2d (Danio rerio, 95.9); mef2a (Xenopus tropicalis, 92.8); Mef2 (Drosophila melanogaster, 91.3); mef-2 (Caenorhabditis elegans, 90.5); AGL6 (Arabidopsis thaliana, 78.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:356857-358887:- | gene-YPL089C_AKU4011 | rna-NM_001183903.1_AKU4011 | cds-NP_015236.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:562530-564578:- | gene-YPL089C_BG1 | rna-NM_001183903.1_BG1 | cds-NP_015236.1_BG1 | 98.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:433186-435216:- | gene-YPL089C_Bruggeman | rna-NM_001183903.1_Bruggeman | cds-NP_015236.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:473528-475570:- | gene-YPL089C_CAT1 | rna-NM_001183903.1_CAT1 | cds-NP_015236.1_CAT1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:360932-362962:- | gene-YPL089C_CBS1585 | rna-NM_001183903.1_CBS1585 | cds-NP_015236.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:375464-377506:- | gene-YPL089C_CBS436 | rna-NM_001183903.1_CBS436 | cds-NP_015236.1_CBS436 | 98.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:365130-367160:- | gene-YPL089C_CBS6412 | rna-NM_001183903.1_CBS6412 | cds-NP_015236.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:357481-359511:- | gene-YPL089C_CBS6413 | rna-NM_001183903.1_CBS6413 | cds-NP_015236.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:379088-381118:- | gene-YPL089C_CENPK1137D | rna-NM_001183903.1_CENPK1137D | cds-NP_015236.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:355224-357254:- | gene-YPL089C_EthanolRed | rna-NM_001183903.1_EthanolRed | cds-NP_015236.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:363056-365086:- | gene-YPL089C_FaliES1 | rna-NM_001183903.1_FaliES1 | cds-NP_015236.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000007.1:715-2757:+ | gene-YPL089C_JAY291 | rna-NM_001183903.1_JAY291 | cds-NP_015236.1_JAY291 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:374017-376047:- | gene-YPL089C_MUCL30387 | rna-NM_001183903.1_MUCL30387 | cds-NP_015236.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:372834-374846:- | gene-YPL089C_MUCL30388 | rna-NM_001183903.1_MUCL30388 | cds-NP_015236.1_MUCL30388 | 98.7 | 99.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:354261-356291:- | gene-YPL089C_MUCL39482 | rna-NM_001183903.1_MUCL39482 | cds-NP_015236.1_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:412114-414153:- | gene-YPL089C_MUCL42920 | rna-NM_001183903.1_MUCL42920 | cds-NP_015236.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:379103-381133:- | gene-YPL089C_NCIM3186 | rna-NM_001183903.1_NCIM3186 | cds-NP_015236.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:360877-362907:- | gene-YPL089C_NCYC1407 | rna-NM_001183903.1_NCYC1407 | cds-NP_015236.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:368121-370163:- | gene-YPL089C_PE2H3 | rna-NM_001183903.1_PE2H3 | cds-NP_015236.1_PE2H3 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:367744-369786:- | gene-YPL089C_PE2H4 | rna-NM_001183903.1_PE2H4 | cds-NP_015236.1_PE2H4 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:379120-381150:- | gene-YPL089C_S288C | rna-NM_001183903.1_S288C | cds-NP_015236.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000057.1:1248-3278:- | gene-YPL089C_SA1 | rna-NM_001183903.1_SA1 | cds-NP_015236.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:362854-364884:- | gene-YPL089C_ThermosaccDry | rna-NM_001183903.1_ThermosaccDry | cds-NP_015236.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:377834-379876:- | gene-YPL089C_VR1 | rna-NM_001183903.1_VR1 | cds-NP_015236.1_VR1 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:362174-364204:- | gene-YPL089C_ZTW1 | rna-NM_001183903.1_ZTW1 | cds-NP_015236.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:363833-365824:- | gene-YPL089C_Sparadoxus | rna-NM_001183903.1_Sparadoxus | cds-NP_015236.1_Sparadoxus | 83.8 | 96.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |