Gene name: RLI1
Reference locus (S288C): YDR091C
Gene biotype: protein_coding
Description: Translation initiation factor RLI1; Essential Fe-S protein; required for ribosome biogenesis, translation initiation/termination; facilitates binding of multifactor complex (MFC) of initiation factors to small ribosomal subunit; Dom34-Hbs1 complex and Rli1p work in dissociating inactive ribosomes, thereby facilitating translation restart; forms complex with Lto1p and Yae1p; dependency on ROS-labile FeS clusters, activity in nuclear ribosomal-subunit export impaired by mild oxidative stress
Top 10 interactors (score): PRT1 (0.999); HCR1 (0.999); ARX1 (0.999); RPG1 (0.999); NIP1 (0.999); SUP45 (0.999); DOM34 (0.999); TIF34 (0.998); ARB1 (0.998); ASC1 (0.997); SUI2 (0.997); RPS13 (0.997); YTM1 (0.996); RPS20 (0.996); RPS3 (0.995); RPS17A (0.995); TIF11 (0.995); HAS1 (0.995); NOG1 (0.994); RPS17B (0.993)
Homologues (species, bitscore): ABCE1 (Homo sapiens, 878.6); Abce1 (Mus musculus, 878.6); abce1 (Danio rerio, 885.6); abce1 (Xenopus tropicalis, 866.3); pix (Drosophila melanogaster, 859.0); abce-1 (Caenorhabditis elegans, 792.0); ABCE2 (Arabidopsis thaliana, 873.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:604261-606087:- | gene-YDR091C_AKU4011 | rna-NM_001180399.3_AKU4011 | cds-NP_010376.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:519241-521067:+ | gene-YDR091C_BG1 | rna-NM_001180399.3_BG1 | cds-NP_010376.3_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:636488-638314:- | gene-YDR091C_Bruggeman | rna-NM_001180399.3_Bruggeman | cds-NP_010376.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:621182-623008:- | gene-YDR091C_CAT1 | rna-NM_001180399.3_CAT1 | cds-NP_010376.3_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:595282-597108:- | gene-YDR091C_CBS1585 | rna-NM_001180399.3_CBS1585 | cds-NP_010376.3_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:620294-622120:- | gene-YDR091C_CBS436 | rna-NM_001180399.3_CBS436 | cds-NP_010376.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:591694-593520:- | gene-YDR091C_CBS6412 | rna-NM_001180399.3_CBS6412 | cds-NP_010376.3_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:620227-622053:- | gene-YDR091C_CBS6413 | rna-NM_001180399.3_CBS6413 | cds-NP_010376.3_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:625747-627607:- | gene-YDR091C_CENPK1137D | rna-NM_001180399.3_CENPK1137D | cds-NP_010376.3_CENPK1137D | 97.6 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:606052-607878:- | gene-YDR091C_EthanolRed | rna-NM_001180399.3_EthanolRed | cds-NP_010376.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:612846-614672:- | gene-YDR091C_FaliES1 | rna-NM_001180399.3_FaliES1 | cds-NP_010376.3_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000358.1:16594-18420:+ | gene-YDR091C_JAY291 | rna-NM_001180399.3_JAY291 | cds-NP_010376.3_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:621107-622933:- | gene-YDR091C_MUCL30387 | rna-NM_001180399.3_MUCL30387 | cds-NP_010376.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:611416-613242:- | gene-YDR091C_MUCL30388 | rna-NM_001180399.3_MUCL30388 | cds-NP_010376.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:596652-598478:- | gene-YDR091C_MUCL39482 | rna-NM_001180399.3_MUCL39482 | cds-NP_010376.3_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:528107-529933:- | gene-YDR091C_MUCL42920 | rna-NM_001180399.3_MUCL42920 | cds-NP_010376.3_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:626631-628457:- | gene-YDR091C_NCIM3186 | rna-NM_001180399.3_NCIM3186 | cds-NP_010376.3_NCIM3186 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:595559-597385:- | gene-YDR091C_NCYC1407 | rna-NM_001180399.3_NCYC1407 | cds-NP_010376.3_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:615026-616852:- | gene-YDR091C_PE2H3 | rna-NM_001180399.3_PE2H3 | cds-NP_010376.3_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:614331-616157:- | gene-YDR091C_PE2H4 | rna-NM_001180399.3_PE2H4 | cds-NP_010376.3_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:626708-628534:- | gene-YDR091C_S288C | rna-NM_001180399.3_S288C | cds-NP_010376.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000011.1:16807-18633:+ | gene-YDR091C_SA1 | rna-NM_001180399.3_SA1 | cds-NP_010376.3_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:612376-614202:- | gene-YDR091C_ThermosaccDry | rna-NM_001180399.3_ThermosaccDry | cds-NP_010376.3_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:624926-626752:- | gene-YDR091C_VR1 | rna-NM_001180399.3_VR1 | cds-NP_010376.3_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:609958-611784:- | gene-YDR091C_ZTW1 | rna-NM_001180399.3_ZTW1 | cds-NP_010376.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:614397-616223:- | gene-YDR091C_Sparadoxus | rna-NM_001180399.3_Sparadoxus | cds-NP_010376.3_Sparadoxus | 93.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |