Gene name: RKM5
Reference locus (S288C): YLR137W
Gene biotype: protein_coding
Description: Protein lysine methyltransferase; monomethylates Lys-46 of the ribosomal large subunit Rpl1a/Rpl1b; member of the seven beta-strand methyltransferase superfamily; orthologs only found among fungal species
Top 10 interactors (score): CDC48 (0.908); RKM3 (0.895); EFM4 (0.894); RKM2 (0.894); RKM1 (0.871); HPM1 (0.847); EFM2 (0.842); TAD3 (0.829); EFM3 (0.815); YNL092W (0.811); EFM5 (0.777); EFM1 (0.775); MTQ1 (0.773); SFM1 (0.769); HMT1 (0.764); RMT2 (0.761); TAE1 (0.75); BMT6 (0.746); RKM4 (0.703); YMR209C (0.701)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:399502-400605:+ | gene-YLR137W_AKU4011 | rna-NM_001182024.1_AKU4011 | cds-NP_013238.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:363270-364373:+ | gene-YLR137W_BG1 | rna-NM_001182024.1_BG1 | cds-NP_013238.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:411371-412474:+ | gene-YLR137W_Bruggeman | rna-NM_001182024.1_Bruggeman | cds-NP_013238.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:410780-411883:+ | gene-YLR137W_CAT1 | rna-NM_001182024.1_CAT1 | cds-NP_013238.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:406646-407749:+ | gene-YLR137W_CBS1585 | rna-NM_001182024.1_CBS1585 | cds-NP_013238.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:396870-397973:+ | gene-YLR137W_CBS436 | rna-NM_001182024.1_CBS436 | cds-NP_013238.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:405063-406166:+ | gene-YLR137W_CBS6412 | rna-NM_001182024.1_CBS6412 | cds-NP_013238.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:406911-408014:+ | gene-YLR137W_CBS6413 | rna-NM_001182024.1_CBS6413 | cds-NP_013238.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:402026-403129:+ | gene-YLR137W_CENPK1137D | rna-NM_001182024.1_CENPK1137D | cds-NP_013238.1_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:399703-400806:+ | gene-YLR137W_EthanolRed | rna-NM_001182024.1_EthanolRed | cds-NP_013238.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:399214-400317:+ | gene-YLR137W_FaliES1 | rna-NM_001182024.1_FaliES1 | cds-NP_013238.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000061.1:5874-6977:+ | gene-YLR137W_JAY291 | rna-NM_001182024.1_JAY291 | cds-NP_013238.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:411376-412479:+ | gene-YLR137W_MUCL30387 | rna-NM_001182024.1_MUCL30387 | cds-NP_013238.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:416179-417282:+ | gene-YLR137W_MUCL30388 | rna-NM_001182024.1_MUCL30388 | cds-NP_013238.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:407155-408258:+ | gene-YLR137W_MUCL39482 | rna-NM_001182024.1_MUCL39482 | cds-NP_013238.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:407283-408386:+ | gene-YLR137W_MUCL42920 | rna-NM_001182024.1_MUCL42920 | cds-NP_013238.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:416980-418083:+ | gene-YLR137W_NCIM3186 | rna-NM_001182024.1_NCIM3186 | cds-NP_013238.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:399427-400530:+ | gene-YLR137W_NCYC1407 | rna-NM_001182024.1_NCYC1407 | cds-NP_013238.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:404980-406083:+ | gene-YLR137W_PE2H3 | rna-NM_001182024.1_PE2H3 | cds-NP_013238.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:404721-405824:+ | gene-YLR137W_PE2H4 | rna-NM_001182024.1_PE2H4 | cds-NP_013238.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:417006-418109:+ | gene-YLR137W_S288C | rna-NM_001182024.1_S288C | cds-NP_013238.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000055.1:42916-44019:+ | gene-YLR137W_SA1 | rna-NM_001182024.1_SA1 | cds-NP_013238.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:400424-401527:+ | gene-YLR137W_ThermosaccDry | rna-NM_001182024.1_ThermosaccDry | cds-NP_013238.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:413121-414224:+ | gene-YLR137W_VR1 | rna-NM_001182024.1_VR1 | cds-NP_013238.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:398218-399321:+ | gene-YLR137W_ZTW1 | rna-NM_001182024.1_ZTW1 | cds-NP_013238.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:408229-409332:+ | gene-YLR137W_Sparadoxus | rna-NM_001182024.1_Sparadoxus | cds-NP_013238.1_Sparadoxus | 87.5 | 98.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |