Gene name: RKM4
Reference locus (S288C): YDR257C
Gene biotype: protein_coding
Description: Ribosomal lysine methyltransferase; specific for monomethylation of Rpl42ap and Rpl42bp (lysine 55); nuclear SET-domain containing protein
Top 10 interactors (score): RKM3 (0.929); RKM2 (0.924); RKM1 (0.905); RMT2 (0.894); HMT1 (0.874); SET6 (0.76); NNT1 (0.724); TAE1 (0.72); HPM1 (0.711); RKM5 (0.703); CTM1 (0.671); PPT2 (0.655); PAU11 (0.651); RIO2 (0.649); SET2 (0.646); UTP30 (0.625); YER039C-A (0.617); EFM4 (0.583); SFM1 (0.573); COS12 (0.572)
Homologues (species, bitscore): SETD6 (Homo sapiens, 114.0); Setd6 (Mus musculus, 109.0); setd6 (Danio rerio, 114.4); setd6 (Xenopus tropicalis, 117.5); set-29 (Caenorhabditis elegans, 56.6); AT3G55080 (Arabidopsis thaliana, 85.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:926352-927836:- | gene-YDR257C_AKU4011 | rna-NM_001180565.1_AKU4011 | cds-NP_010543.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:197435-198919:+ | gene-YDR257C_BG1 | rna-NM_001180565.1_BG1 | cds-NP_010543.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:958681-960165:- | gene-YDR257C_Bruggeman | rna-NM_001180565.1_Bruggeman | cds-NP_010543.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:945960-947444:- | gene-YDR257C_CAT1 | rna-NM_001180565.1_CAT1 | cds-NP_010543.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:916701-918185:- | gene-YDR257C_CBS1585 | rna-NM_001180565.1_CBS1585 | cds-NP_010543.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:946226-947710:- | gene-YDR257C_CBS436 | rna-NM_001180565.1_CBS436 | cds-NP_010543.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:913461-914945:- | gene-YDR257C_CBS6412 | rna-NM_001180565.1_CBS6412 | cds-NP_010543.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:944555-946039:- | gene-YDR257C_CBS6413 | rna-NM_001180565.1_CBS6413 | cds-NP_010543.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:968913-970397:- | gene-YDR257C_CENPK1137D | rna-NM_001180565.1_CENPK1137D | cds-NP_010543.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:927020-928504:- | gene-YDR257C_EthanolRed | rna-NM_001180565.1_EthanolRed | cds-NP_010543.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:935222-936706:- | gene-YDR257C_FaliES1 | rna-NM_001180565.1_FaliES1 | cds-NP_010543.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000261.1:23722-25206:- | gene-YDR257C_JAY291 | rna-NM_001180565.1_JAY291 | cds-NP_010543.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:944579-946063:- | gene-YDR257C_MUCL30387 | rna-NM_001180565.1_MUCL30387 | cds-NP_010543.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:932609-934093:- | gene-YDR257C_MUCL30388 | rna-NM_001180565.1_MUCL30388 | cds-NP_010543.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:918106-919590:- | gene-YDR257C_MUCL39482 | rna-NM_001180565.1_MUCL39482 | cds-NP_010543.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:857866-859350:- | gene-YDR257C_MUCL42920 | rna-NM_001180565.1_MUCL42920 | cds-NP_010543.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:969913-971397:- | gene-YDR257C_NCIM3186 | rna-NM_001180565.1_NCIM3186 | cds-NP_010543.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:921775-923259:- | gene-YDR257C_NCYC1407 | rna-NM_001180565.1_NCYC1407 | cds-NP_010543.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:937999-939483:- | gene-YDR257C_PE2H3 | rna-NM_001180565.1_PE2H3 | cds-NP_010543.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:943276-944760:- | gene-YDR257C_PE2H4 | rna-NM_001180565.1_PE2H4 | cds-NP_010543.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:969990-971474:- | gene-YDR257C_S288C | rna-NM_001180565.1_S288C | cds-NP_010543.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000013.1:175836-177320:- | gene-YDR257C_SA1 | rna-NM_001180565.1_SA1 | cds-NP_010543.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:933376-934860:- | gene-YDR257C_ThermosaccDry | rna-NM_001180565.1_ThermosaccDry | cds-NP_010543.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:948599-950083:- | gene-YDR257C_VR1 | rna-NM_001180565.1_VR1 | cds-NP_010543.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000007.1:196120-197604:- | gene-YDR257C_ZTW1 | rna-NM_001180565.1_ZTW1 | cds-NP_010543.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:938753-940237:- | gene-YDR257C_Sparadoxus | rna-NM_001180565.1_Sparadoxus | cds-NP_010543.1_Sparadoxus | 86.8 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |