Gene name: RKM3
Reference locus (S288C): YBR030W
Gene biotype: protein_coding
Description: Ribosomal lysine methyltransferase; specific for monomethylation of Rpl42ap and Rpl42bp (lysine 40); nuclear SET domain containing protein; relocalizes to the cytosol in response to hypoxia
Top 10 interactors (score): RKM2 (0.944); RKM4 (0.929); RKM1 (0.918); RKM5 (0.895); HPM1 (0.844); TAE1 (0.839); RMT2 (0.83); HMT1 (0.783); YNL092W (0.764); EFM2 (0.741); EFM4 (0.72); SFM1 (0.718); BMT6 (0.712); MTQ1 (0.709); EFM1 (0.705); DPH5 (0.693); MHT1 (0.692); EFM3 (0.667); BMT2 (0.663); MAP1 (0.62)
Homologues (species, bitscore): SETD6 (Homo sapiens, 50.4); setd6 (Danio rerio, 56.6); setd6 (Xenopus tropicalis, 59.3); AT3G56570 (Arabidopsis thaliana, 104.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:280720-282390:+ | gene-YBR030W_AKU4011 | rna-NM_001178378.1_AKU4011 | cds-NP_009586.1_AKU4011 | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:270857-272527:+ | gene-YBR030W_BG1 | rna-NM_001178378.1_BG1 | cds-NP_009586.1_BG1 | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:484143-485813:+ | gene-YBR030W_Bruggeman | rna-NM_001178378.1_Bruggeman | cds-NP_009586.1_Bruggeman | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:284887-286557:+ | gene-YBR030W_CAT1 | rna-NM_001178378.1_CAT1 | cds-NP_009586.1_CAT1 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:272764-274434:+ | gene-YBR030W_CBS1585 | rna-NM_001178378.1_CBS1585 | cds-NP_009586.1_CBS1585 | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:281023-282693:+ | gene-YBR030W_CBS436 | rna-NM_001178378.1_CBS436 | cds-NP_009586.1_CBS436 | 98.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:371270-372940:+ | gene-YBR030W_CBS6412 | rna-NM_001178378.1_CBS6412 | cds-NP_009586.1_CBS6412 | 98.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:278131-279801:+ | gene-YBR030W_CBS6413 | rna-NM_001178378.1_CBS6413 | cds-NP_009586.1_CBS6413 | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:292037-293689:+ | gene-YBR030W_CENPK1137D | rna-NM_001178378.1_CENPK1137D | cds-NP_009586.1_CENPK1137D | 98.6 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:407735-409168:+ | gene-YBR030W_EthanolRed | rna-NM_001178378.1_EthanolRed | cds-NP_009586.1_EthanolRed | 84.9 | 86.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:295830-297518:+ | gene-YBR030W_FaliES1 | rna-NM_001178378.1_FaliES1 | cds-NP_009586.1_FaliES1 | 97.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000048.1:110-1762:- | gene-YBR030W_JAY291 | rna-NM_001178378.1_JAY291 | cds-NP_009586.1_JAY291 | 98.7 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:282049-283719:+ | gene-YBR030W_MUCL30387 | rna-NM_001178378.1_MUCL30387 | cds-NP_009586.1_MUCL30387 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:282306-283958:+ | gene-YBR030W_MUCL30388 | rna-NM_001178378.1_MUCL30388 | cds-NP_009586.1_MUCL30388 | 98.6 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:272753-274423:+ | gene-YBR030W_MUCL39482 | rna-NM_001178378.1_MUCL39482 | cds-NP_009586.1_MUCL39482 | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:280196-281866:+ | gene-YBR030W_MUCL42920 | rna-NM_001178378.1_MUCL42920 | cds-NP_009586.1_MUCL42920 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:298089-299747:+ | gene-YBR030W_NCIM3186 | rna-NM_001178378.1_NCIM3186 | cds-NP_009586.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:273917-275587:+ | gene-YBR030W_NCYC1407 | rna-NM_001178378.1_NCYC1407 | cds-NP_009586.1_NCYC1407 | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:286101-287753:+ | gene-YBR030W_PE2H3 | rna-NM_001178378.1_PE2H3 | cds-NP_009586.1_PE2H3 | 98.7 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:283767-285425:+ | gene-YBR030W_PE2H4 | rna-NM_001178378.1_PE2H4 | cds-NP_009586.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:298292-299950:+ | gene-YBR030W_S288C | rna-NM_001178378.1_S288C | cds-NP_009586.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000143.1:2183-3835:+ | gene-YBR030W_SA1 | rna-NM_001178378.1_SA1 | cds-NP_009586.1_SA1 | 98.7 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:295538-297208:+ | gene-YBR030W_ThermosaccDry | rna-NM_001178378.1_ThermosaccDry | cds-NP_009586.1_ThermosaccDry | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:277453-279105:+ | gene-YBR030W_VR1 | rna-NM_001178378.1_VR1 | cds-NP_009586.1_VR1 | 98.9 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:271514-273184:+ | gene-YBR030W_ZTW1 | rna-NM_001178378.1_ZTW1 | cds-NP_009586.1_ZTW1 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:307748-309415:+ | gene-YBR030W_Sparadoxus | rna-NM_001178378.1_Sparadoxus | cds-NP_009586.1_Sparadoxus | 86.4 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |