Gene name: RKM2
Reference locus (S288C): YDR198C
Gene biotype: protein_coding
Description: Ribosomal lysine n-methyltransferase 2; Ribosomal protein lysine methyltransferase; responsible for trimethylation of the lysine residue at position 3 of Rpl12Ap and Rpl12Bp
Top 10 interactors (score): RKM1 (0.991); RMT2 (0.977); TAE1 (0.96); RKM3 (0.944); EFM4 (0.928); RKM4 (0.924); HMT1 (0.9); RKM5 (0.894); MTQ1 (0.886); YNL092W (0.884); EFM3 (0.877); EFM2 (0.875); BMT2 (0.871); HPM1 (0.859); TRM12 (0.791); CTM1 (0.746); SET2 (0.737); SFM1 (0.699); SET1 (0.698); JHD1 (0.671)
Homologues (species, bitscore): SETD4 (Homo sapiens, 55.8); Setd4 (Mus musculus, 60.5); setd4 (Danio rerio, 57.8); setd4 (Xenopus tropicalis, 63.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:821062-822501:- | gene-YDR198C_AKU4011 | rna-NM_001180506.1_AKU4011 | cds-NP_010484.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:303313-304752:+ | gene-YDR198C_BG1 | rna-NM_001180506.1_BG1 | cds-NP_010484.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:853474-854913:- | gene-YDR198C_Bruggeman | rna-NM_001180506.1_Bruggeman | cds-NP_010484.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:840747-842186:- | gene-YDR198C_CAT1 | rna-NM_001180506.1_CAT1 | cds-NP_010484.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:811422-812861:- | gene-YDR198C_CBS1585 | rna-NM_001180506.1_CBS1585 | cds-NP_010484.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:840431-841870:- | gene-YDR198C_CBS436 | rna-NM_001180506.1_CBS436 | cds-NP_010484.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:808229-809668:- | gene-YDR198C_CBS6412 | rna-NM_001180506.1_CBS6412 | cds-NP_010484.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:838773-840212:- | gene-YDR198C_CBS6413 | rna-NM_001180506.1_CBS6413 | cds-NP_010484.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:851365-852804:- | gene-YDR198C_CENPK1137D | rna-NM_001180506.1_CENPK1137D | cds-NP_010484.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:821813-823252:- | gene-YDR198C_EthanolRed | rna-NM_001180506.1_EthanolRed | cds-NP_010484.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:830025-831464:- | gene-YDR198C_FaliES1 | rna-NM_001180506.1_FaliES1 | cds-NP_010484.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000068.1:17883-19322:+ | gene-YDR198C_JAY291 | rna-NM_001180506.1_JAY291 | cds-NP_010484.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:839127-840566:- | gene-YDR198C_MUCL30387 | rna-NM_001180506.1_MUCL30387 | cds-NP_010484.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:827376-828815:- | gene-YDR198C_MUCL30388 | rna-NM_001180506.1_MUCL30388 | cds-NP_010484.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:812869-814308:- | gene-YDR198C_MUCL39482 | rna-NM_001180506.1_MUCL39482 | cds-NP_010484.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:751572-753011:- | gene-YDR198C_MUCL42920 | rna-NM_001180506.1_MUCL42920 | cds-NP_010484.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:852456-853895:- | gene-YDR198C_NCIM3186 | rna-NM_001180506.1_NCIM3186 | cds-NP_010484.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:816003-817442:- | gene-YDR198C_NCYC1407 | rna-NM_001180506.1_NCYC1407 | cds-NP_010484.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:832761-834200:- | gene-YDR198C_PE2H3 | rna-NM_001180506.1_PE2H3 | cds-NP_010484.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:832059-833498:- | gene-YDR198C_PE2H4 | rna-NM_001180506.1_PE2H4 | cds-NP_010484.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:852533-853972:- | gene-YDR198C_S288C | rna-NM_001180506.1_S288C | cds-NP_010484.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000009.1:198238-199677:- | gene-YDR198C_SA1 | rna-NM_001180506.1_SA1 | cds-NP_010484.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:828180-829619:- | gene-YDR198C_ThermosaccDry | rna-NM_001180506.1_ThermosaccDry | cds-NP_010484.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:843407-844846:- | gene-YDR198C_VR1 | rna-NM_001180506.1_VR1 | cds-NP_010484.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000007.1:90898-92337:- | gene-YDR198C_ZTW1 | rna-NM_001180506.1_ZTW1 | cds-NP_010484.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:833048-834487:- | gene-YDR198C_Sparadoxus | rna-NM_001180506.1_Sparadoxus | cds-NP_010484.1_Sparadoxus | 87.7 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |