Gene name: RKM1
Reference locus (S288C): YPL208W
Gene biotype: protein_coding
Description: SET-domain lysine-N-methyltransferase; catalyzes the formation of dimethyllysine residues on the large ribosomal subunit proteins L23 (Rpl23Ap and Rpl23Bp) and monomethyllysine residues on L18 (Rps18Ap and Rps18Bp)
Top 10 interactors (score): RKM2 (0.991); RMT2 (0.961); EFM4 (0.95); BCP1 (0.941); RKM3 (0.918); RKM4 (0.905); TAE1 (0.895); RKM5 (0.871); EFM2 (0.864); YNL092W (0.863); MTQ1 (0.825); SET5 (0.824); EFM3 (0.815); RPL23A (0.814); CTM1 (0.813); HMT1 (0.812); BMT2 (0.811); HPM1 (0.801); SET6 (0.792); TRM12 (0.716)
Homologues (species, bitscore): AT1G01920 (Arabidopsis thaliana, 57.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:135718-137469:+ | gene-YPL208W_AKU4011 | rna-NM_001184022.1_AKU4011 | cds-NP_015116.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:341484-343235:+ | gene-YPL208W_BG1 | rna-NM_001184022.1_BG1 | cds-NP_015116.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:161178-162929:+ | gene-YPL208W_Bruggeman | rna-NM_001184022.1_Bruggeman | cds-NP_015116.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:157786-159537:+ | gene-YPL208W_CAT1 | rna-NM_001184022.1_CAT1 | cds-NP_015116.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:139903-141654:+ | gene-YPL208W_CBS1585 | rna-NM_001184022.1_CBS1585 | cds-NP_015116.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:154322-156073:+ | gene-YPL208W_CBS436 | rna-NM_001184022.1_CBS436 | cds-NP_015116.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:144707-146458:+ | gene-YPL208W_CBS6412 | rna-NM_001184022.1_CBS6412 | cds-NP_015116.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:136081-137832:+ | gene-YPL208W_CBS6413 | rna-NM_001184022.1_CBS6413 | cds-NP_015116.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:157779-159530:+ | gene-YPL208W_CENPK1137D | rna-NM_001184022.1_CENPK1137D | cds-NP_015116.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:134834-136585:+ | gene-YPL208W_EthanolRed | rna-NM_001184022.1_EthanolRed | cds-NP_015116.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:142040-143791:+ | gene-YPL208W_FaliES1 | rna-NM_001184022.1_FaliES1 | cds-NP_015116.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000069.1:14538-16289:- | gene-YPL208W_JAY291 | rna-NM_001184022.1_JAY291 | cds-NP_015116.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:152890-154641:+ | gene-YPL208W_MUCL30387 | rna-NM_001184022.1_MUCL30387 | cds-NP_015116.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:151081-152832:+ | gene-YPL208W_MUCL30388 | rna-NM_001184022.1_MUCL30388 | cds-NP_015116.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:133033-134784:+ | gene-YPL208W_MUCL39482 | rna-NM_001184022.1_MUCL39482 | cds-NP_015116.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:151912-153663:+ | gene-YPL208W_MUCL42920 | rna-NM_001184022.1_MUCL42920 | cds-NP_015116.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:157825-159576:+ | gene-YPL208W_NCIM3186 | rna-NM_001184022.1_NCIM3186 | cds-NP_015116.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:139482-141233:+ | gene-YPL208W_NCYC1407 | rna-NM_001184022.1_NCYC1407 | cds-NP_015116.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:147185-148936:+ | gene-YPL208W_PE2H3 | rna-NM_001184022.1_PE2H3 | cds-NP_015116.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:146828-148579:+ | gene-YPL208W_PE2H4 | rna-NM_001184022.1_PE2H4 | cds-NP_015116.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:157842-159593:+ | gene-YPL208W_S288C | rna-NM_001184022.1_S288C | cds-NP_015116.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000095.1:14589-16340:- | gene-YPL208W_SA1 | rna-NM_001184022.1_SA1 | cds-NP_015116.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:141821-143572:+ | gene-YPL208W_ThermosaccDry | rna-NM_001184022.1_ThermosaccDry | cds-NP_015116.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:155865-157616:+ | gene-YPL208W_VR1 | rna-NM_001184022.1_VR1 | cds-NP_015116.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:141341-143092:+ | gene-YPL208W_ZTW1 | rna-NM_001184022.1_ZTW1 | cds-NP_015116.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:142896-144647:+ | gene-YPL208W_Sparadoxus | rna-NM_001184022.1_Sparadoxus | cds-NP_015116.1_Sparadoxus | 87.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |