Gene name: RIX7
Reference locus (S288C): YLL034C
Gene biotype: protein_coding
Description: Ribosome biogenesis ATPase RIX7; Putative ATPase of the AAA family; required for export of pre-ribosomal large subunits from the nucleus; distributed between the nucleolus, nucleoplasm, and nuclear periphery depending on growth conditions
Top 10 interactors (score): NOP4 (0.999); YTM1 (0.999); NSA1 (0.999); ERB1 (0.998); NOG1 (0.998); NOP15 (0.998); EBP2 (0.997); NUG1 (0.997); NOP7 (0.997); NOG2 (0.997); MDN1 (0.997); ARX1 (0.996); NOC3 (0.996); RPF2 (0.996); RLP24 (0.996); NOC2 (0.996); MTR4 (0.995); NOP2 (0.995); DBP10 (0.994); SPB1 (0.994)
Homologues (species, bitscore): NVL (Homo sapiens, 617.1); Nvl (Mus musculus, 617.1); nvl (Danio rerio, 614.4); nvl (Xenopus tropicalis, 630.2); smid (Drosophila melanogaster, 525.4); mac-1 (Caenorhabditis elegans, 556.6); CDC48C (Arabidopsis thaliana, 505.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:57791-60304:- | gene-YLL034C_AKU4011 | rna-NM_001181854.1_AKU4011 | cds-NP_013066.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:21732-24245:- | gene-YLL034C_BG1 | rna-NM_001181854.1_BG1 | cds-NP_013066.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:68046-70559:- | gene-YLL034C_Bruggeman | rna-NM_001181854.1_Bruggeman | cds-NP_013066.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:68669-71182:- | gene-YLL034C_CAT1 | rna-NM_001181854.1_CAT1 | cds-NP_013066.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:65491-68004:- | gene-YLL034C_CBS1585 | rna-NM_001181854.1_CBS1585 | cds-NP_013066.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:55690-58203:- | gene-YLL034C_CBS436 | rna-NM_001181854.1_CBS436 | cds-NP_013066.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:65361-67874:- | gene-YLL034C_CBS6412 | rna-NM_001181854.1_CBS6412 | cds-NP_013066.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:65487-68000:- | gene-YLL034C_CBS6413 | rna-NM_001181854.1_CBS6413 | cds-NP_013066.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:55640-58153:- | gene-YLL034C_CENPK1137D | rna-NM_001181854.1_CENPK1137D | cds-NP_013066.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:58188-60701:- | gene-YLL034C_EthanolRed | rna-NM_001181854.1_EthanolRed | cds-NP_013066.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:57501-60014:- | gene-YLL034C_FaliES1 | rna-NM_001181854.1_FaliES1 | cds-NP_013066.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000118.1:18989-21502:+ | gene-YLL034C_JAY291 | rna-NM_001181854.1_JAY291 | cds-NP_013066.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:65457-67970:- | gene-YLL034C_MUCL30387 | rna-NM_001181854.1_MUCL30387 | cds-NP_013066.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:70182-72695:- | gene-YLL034C_MUCL30388 | rna-NM_001181854.1_MUCL30388 | cds-NP_013066.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:65700-68213:- | gene-YLL034C_MUCL39482 | rna-NM_001181854.1_MUCL39482 | cds-NP_013066.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:65549-68062:- | gene-YLL034C_MUCL42920 | rna-NM_001181854.1_MUCL42920 | cds-NP_013066.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:70607-73120:- | gene-YLL034C_NCIM3186 | rna-NM_001181854.1_NCIM3186 | cds-NP_013066.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:57566-60079:- | gene-YLL034C_NCYC1407 | rna-NM_001181854.1_NCYC1407 | cds-NP_013066.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:64252-66765:- | gene-YLL034C_PE2H3 | rna-NM_001181854.1_PE2H3 | cds-NP_013066.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:64061-66574:- | gene-YLL034C_PE2H4 | rna-NM_001181854.1_PE2H4 | cds-NP_013066.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:70633-73146:- | gene-YLL034C_S288C | rna-NM_001181854.1_S288C | cds-NP_013066.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000047.1:64154-66667:- | gene-YLL034C_SA1 | rna-NM_001181854.1_SA1 | cds-NP_013066.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:58007-60520:- | gene-YLL034C_ThermosaccDry | rna-NM_001181854.1_ThermosaccDry | cds-NP_013066.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:71828-74341:- | gene-YLL034C_VR1 | rna-NM_001181854.1_VR1 | cds-NP_013066.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:57557-60070:- | gene-YLL034C_ZTW1 | rna-NM_001181854.1_ZTW1 | cds-NP_013066.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:66175-68688:- | gene-YLL034C_Sparadoxus | rna-NM_001181854.1_Sparadoxus | cds-NP_013066.1_Sparadoxus | 91.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |