Gene name: RIX1
Reference locus (S288C): YHR197W
Gene biotype: protein_coding
Description: Pre-rRNA-processing protein RIX1; Component of the Rix1 complex and possibly pre-replicative complexes; required for processing of ITS2 sequences from 35S pre-rRNA; component of the pre-60S ribosomal particle with the dynein-related AAA-type ATPase Mdn1p; required for pre-replicative complex (pre-RC) formation and maintenance during DNA replication licensing; relocalizes to the cytosol in response to hypoxia; essential gene; Belongs to the RIX1/PELP1 family
Top 10 interactors (score): ARX1 (0.999); NUG1 (0.999); SDA1 (0.999); IPI1 (0.999); IPI3 (0.999); NSA2 (0.999); NOG2 (0.999); RSA4 (0.999); NOG1 (0.999); RLP24 (0.998); NOP7 (0.998); ERB1 (0.998); YTM1 (0.997); MDN1 (0.997); CIC1 (0.995); MRT4 (0.995); NOP15 (0.993); RPF2 (0.993); NOC2 (0.993); TIF6 (0.993)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:480976-483267:+ | gene-YHR197W_AKU4011 | rna-NM_001179328.4_AKU4011 | cds-NP_012067.4_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000141.1:34482-36773:- | gene-YHR197W_BG1 | rna-NM_001179328.4_BG1 | cds-NP_012067.4_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:488217-490508:+ | gene-YHR197W_Bruggeman | rna-NM_001179328.4_Bruggeman | cds-NP_012067.4_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:484500-486791:+ | gene-YHR197W_CAT1 | rna-NM_001179328.4_CAT1 | cds-NP_012067.4_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:480428-482719:+ | gene-YHR197W_CBS1585 | rna-NM_001179328.4_CBS1585 | cds-NP_012067.4_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:478367-480658:+ | gene-YHR197W_CBS436 | rna-NM_001179328.4_CBS436 | cds-NP_012067.4_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:480527-482818:+ | gene-YHR197W_CBS6412 | rna-NM_001179328.4_CBS6412 | cds-NP_012067.4_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:481818-484109:+ | gene-YHR197W_CBS6413 | rna-NM_001179328.4_CBS6413 | cds-NP_012067.4_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:487082-489373:+ | gene-YHR197W_CENPK1137D | rna-NM_001179328.4_CENPK1137D | cds-NP_012067.4_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:539514-541805:+ | gene-YHR197W_EthanolRed | rna-NM_001179328.4_EthanolRed | cds-NP_012067.4_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:481958-484249:+ | gene-YHR197W_FaliES1 | rna-NM_001179328.4_FaliES1 | cds-NP_012067.4_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000147.1:27118-29409:+ | gene-YHR197W_JAY291 | rna-NM_001179328.4_JAY291 | cds-NP_012067.4_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:489543-491834:+ | gene-YHR197W_MUCL30387 | rna-NM_001179328.4_MUCL30387 | cds-NP_012067.4_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:488966-491257:+ | gene-YHR197W_MUCL30388 | rna-NM_001179328.4_MUCL30388 | cds-NP_012067.4_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:480339-482630:+ | gene-YHR197W_MUCL39482 | rna-NM_001179328.4_MUCL39482 | cds-NP_012067.4_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:488283-490574:+ | gene-YHR197W_MUCL42920 | rna-NM_001179328.4_MUCL42920 | cds-NP_012067.4_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:493778-496069:+ | gene-YHR197W_NCIM3186 | rna-NM_001179328.4_NCIM3186 | cds-NP_012067.4_NCIM3186 | 92.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:482802-485093:+ | gene-YHR197W_NCYC1407 | rna-NM_001179328.4_NCYC1407 | cds-NP_012067.4_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:481957-484248:+ | gene-YHR197W_PE2H3 | rna-NM_001179328.4_PE2H3 | cds-NP_012067.4_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:489384-491675:+ | gene-YHR197W_PE2H4 | rna-NM_001179328.4_PE2H4 | cds-NP_012067.4_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:493896-496187:+ | gene-YHR197W_S288C | rna-NM_001179328.4_S288C | cds-NP_012067.4_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000079.1:42043-44334:+ | gene-YHR197W_SA1 | rna-NM_001179328.4_SA1 | cds-NP_012067.4_SA1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:483041-485332:+ | gene-YHR197W_ThermosaccDry | rna-NM_001179328.4_ThermosaccDry | cds-NP_012067.4_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:492259-494550:+ | gene-YHR197W_VR1 | rna-NM_001179328.4_VR1 | cds-NP_012067.4_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:473278-475569:+ | gene-YHR197W_ZTW1 | rna-NM_001179328.4_ZTW1 | cds-NP_012067.4_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:479979-482264:+ | gene-YHR197W_Sparadoxus | rna-NM_001179328.4_Sparadoxus | cds-NP_012067.4_Sparadoxus | 88.0 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |