Gene name: RIP1
Reference locus (S288C): YEL024W
Gene biotype: protein_coding
Description: Ubiquinol-cytochrome-c reductase; a Rieske iron-sulfur protein of the mitochondrial cytochrome bc1 complex; transfers electrons from ubiquinol to cytochrome c1 during respiration; during import, Rip1p is first imported into the mitochondrial matrix where it is processed, acquires its Fe-S cluster, and is folded, then is translocated into the inner membrane by the action of a homo-oligomer of Bcs1p, and finally is delivered by Bcs1p to Complex III for assembly
Top 10 interactors (score): QCR2 (0.999); CYT1 (0.999); QCR8 (0.999); COX5A (0.999); QCR9 (0.999); CYC7 (0.999); QCR6 (0.999); SDH2 (0.999); COX12 (0.999); SDH1 (0.999); COX2 (0.999); MAS1 (0.999); CYC1 (0.999); COX13 (0.999); COX4 (0.999); COX8 (0.999); COR1 (0.999); COX6 (0.999); QCR7 (0.999); COB (0.999)
Homologues (species, bitscore): UQCRFS1 (Homo sapiens, 232.3); Uqcrfs1 (Mus musculus, 237.3); Uqcrfs1 (Danio rerio, 233.4); uqcrfs1 (Xenopus tropicalis, 235.0); RFeSP (Drosophila melanogaster, 116.7); isp-1 (Caenorhabditis elegans, 197.6); AT5G13440 (Arabidopsis thaliana, 214.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:101295-101942:+ | gene-YEL024W_AKU4011 | rna-NM_001178839.3_AKU4011 | cds-NP_010890.3_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:324018-324665:- | gene-YEL024W_BG1 | rna-NM_001178839.3_BG1 | cds-NP_010890.3_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:106696-107343:+ | gene-YEL024W_Bruggeman | rna-NM_001178839.3_Bruggeman | cds-NP_010890.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:103472-104119:+ | gene-YEL024W_CAT1 | rna-NM_001178839.3_CAT1 | cds-NP_010890.3_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:101236-101883:+ | gene-YEL024W_CBS1585 | rna-NM_001178839.3_CBS1585 | cds-NP_010890.3_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:102869-103516:+ | gene-YEL024W_CBS436 | rna-NM_001178839.3_CBS436 | cds-NP_010890.3_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:101515-102162:+ | gene-YEL024W_CBS6412 | rna-NM_001178839.3_CBS6412 | cds-NP_010890.3_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:106128-106775:+ | gene-YEL024W_CBS6413 | rna-NM_001178839.3_CBS6413 | cds-NP_010890.3_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:105119-105766:+ | gene-YEL024W_CENPK1137D | rna-NM_001178839.3_CENPK1137D | cds-NP_010890.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:101626-102273:+ | gene-YEL024W_EthanolRed | rna-NM_001178839.3_EthanolRed | cds-NP_010890.3_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:101885-102532:+ | gene-YEL024W_FaliES1 | rna-NM_001178839.3_FaliES1 | cds-NP_010890.3_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000398.1:20770-21417:+ | gene-YEL024W_JAY291 | rna-NM_001178839.3_JAY291 | cds-NP_010890.3_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:105549-106196:+ | gene-YEL024W_MUCL30387 | rna-NM_001178839.3_MUCL30387 | cds-NP_010890.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:101521-102168:+ | gene-YEL024W_MUCL30388 | rna-NM_001178839.3_MUCL30388 | cds-NP_010890.3_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:100605-101252:+ | gene-YEL024W_MUCL39482 | rna-NM_001178839.3_MUCL39482 | cds-NP_010890.3_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:105235-105882:+ | gene-YEL024W_MUCL42920 | rna-NM_001178839.3_MUCL42920 | cds-NP_010890.3_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:107259-107906:+ | gene-YEL024W_NCIM3186 | rna-NM_001178839.3_NCIM3186 | cds-NP_010890.3_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:105700-106347:+ | gene-YEL024W_NCYC1407 | rna-NM_001178839.3_NCYC1407 | cds-NP_010890.3_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:109736-110383:+ | gene-YEL024W_PE2H3 | rna-NM_001178839.3_PE2H3 | cds-NP_010890.3_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:105651-106298:+ | gene-YEL024W_PE2H4 | rna-NM_001178839.3_PE2H4 | cds-NP_010890.3_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:107260-107907:+ | gene-YEL024W_S288C | rna-NM_001178839.3_S288C | cds-NP_010890.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000020.1:135328-135975:- | gene-YEL024W_SA1 | rna-NM_001178839.3_SA1 | cds-NP_010890.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:102290-102937:+ | gene-YEL024W_ThermosaccDry | rna-NM_001178839.3_ThermosaccDry | cds-NP_010890.3_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:101819-102466:+ | gene-YEL024W_VR1 | rna-NM_001178839.3_VR1 | cds-NP_010890.3_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:100647-101294:+ | gene-YEL024W_ZTW1 | rna-NM_001178839.3_ZTW1 | cds-NP_010890.3_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:103814-104461:+ | gene-YEL024W_Sparadoxus | rna-NM_001178839.3_Sparadoxus | cds-NP_010890.3_Sparadoxus | 93.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |