Gene name: RIO2
Reference locus (S288C): YNL207W
Gene biotype: protein_coding
Description: Serine/threonine-protein kinase RIO2; Essential serine kinase involved in the processing of 20S pre-rRNA; involved in the processing of the 20S pre-rRNA into mature 18S rRNA; has similarity to Rio1p; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family
Top 10 interactors (score): NOB1 (0.999); ENP1 (0.999); DIM1 (0.999); PNO1 (0.999); TSR1 (0.999); LTV1 (0.999); RPS15 (0.998); RPS5 (0.998); RIO1 (0.997); KRR1 (0.995); RPS3 (0.994); HRR25 (0.992); RPS19A (0.991); IMP4 (0.988); RPS14A (0.986); TSR2 (0.985); RPS20 (0.985); UTP15 (0.983); RPS13 (0.981); RPS8A (0.978)
Homologues (species, bitscore): RIOK2 (Homo sapiens, 297.0); Riok1 (Mus musculus, 57.8); riok2 (Danio rerio, 303.9); riok2 (Xenopus tropicalis, 301.2); RIOK2 (Drosophila melanogaster, 300.1); riok-2 (Caenorhabditis elegans, 300.1); AT3G51270 (Arabidopsis thaliana, 297.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:249131-250408:+ | gene-YNL207W_AKU4011 | rna-NM_001183045.1_AKU4011 | cds-NP_014192.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:153078-154355:+ | gene-YNL207W_BG1 | rna-NM_001183045.1_BG1 | cds-NP_014192.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:259177-260454:+ | gene-YNL207W_Bruggeman | rna-NM_001183045.1_Bruggeman | cds-NP_014192.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:301418-302695:+ | gene-YNL207W_CAT1 | rna-NM_001183045.1_CAT1 | cds-NP_014192.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:249777-251054:+ | gene-YNL207W_CBS1585 | rna-NM_001183045.1_CBS1585 | cds-NP_014192.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:318062-319339:+ | gene-YNL207W_CBS436 | rna-NM_001183045.1_CBS436 | cds-NP_014192.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:245189-246466:+ | gene-YNL207W_CBS6412 | rna-NM_001183045.1_CBS6412 | cds-NP_014192.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:246210-247487:+ | gene-YNL207W_CBS6413 | rna-NM_001183045.1_CBS6413 | cds-NP_014192.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:249201-250478:+ | gene-YNL207W_CENPK1137D | rna-NM_001183045.1_CENPK1137D | cds-NP_014192.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:246095-247372:+ | gene-YNL207W_EthanolRed | rna-NM_001183045.1_EthanolRed | cds-NP_014192.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:242008-243285:+ | gene-YNL207W_FaliES1 | rna-NM_001183045.1_FaliES1 | cds-NP_014192.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000260.1:75079-76356:- | gene-YNL207W_JAY291 | rna-NM_001183045.1_JAY291 | cds-NP_014192.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:254963-256240:+ | gene-YNL207W_MUCL30387 | rna-NM_001183045.1_MUCL30387 | cds-NP_014192.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:289330-290607:+ | gene-YNL207W_MUCL30388 | rna-NM_001183045.1_MUCL30388 | cds-NP_014192.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:247016-248293:+ | gene-YNL207W_MUCL39482 | rna-NM_001183045.1_MUCL39482 | cds-NP_014192.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:249379-250656:+ | gene-YNL207W_MUCL42920 | rna-NM_001183045.1_MUCL42920 | cds-NP_014192.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:255322-256599:+ | gene-YNL207W_NCIM3186 | rna-NM_001183045.1_NCIM3186 | cds-NP_014192.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:249106-250383:+ | gene-YNL207W_NCYC1407 | rna-NM_001183045.1_NCYC1407 | cds-NP_014192.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:246015-247292:+ | gene-YNL207W_PE2H3 | rna-NM_001183045.1_PE2H3 | cds-NP_014192.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:245403-246680:+ | gene-YNL207W_PE2H4 | rna-NM_001183045.1_PE2H4 | cds-NP_014192.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:255353-256630:+ | gene-YNL207W_S288C | rna-NM_001183045.1_S288C | cds-NP_014192.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000018.1:156971-158248:- | gene-YNL207W_SA1 | rna-NM_001183045.1_SA1 | cds-NP_014192.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:242865-244142:+ | gene-YNL207W_ThermosaccDry | rna-NM_001183045.1_ThermosaccDry | cds-NP_014192.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:261370-262647:+ | gene-YNL207W_VR1 | rna-NM_001183045.1_VR1 | cds-NP_014192.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:152698-153975:+ | gene-YNL207W_ZTW1 | rna-NM_001183045.1_ZTW1 | cds-NP_014192.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:253180-254457:+ | gene-YNL207W_Sparadoxus | rna-NM_001183045.1_Sparadoxus | cds-NP_014192.1_Sparadoxus | 90.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |