Gene name: RIM8
Reference locus (S288C): YGL045W
Gene biotype: protein_coding
Description: pH-response regulator protein palF/RIM8; Protein involved in proteolytic activation of Rim101p; part of response to alkaline pH; interacts with ESCRT-1 subunits Stp22p and Vps28p; essential for anaerobic growth; member of the arrestin-related trafficking adaptor family
Top 10 interactors (score): RIM21 (0.999); RIM101 (0.997); STP22 (0.996); RIM13 (0.986); RIM20 (0.984); DFG16 (0.973); RIM9 (0.971); SNF7 (0.921); RSP5 (0.917); YGR122W (0.813); ROG3 (0.774); CSR2 (0.767); BRO1 (0.759); ECM21 (0.748); ALY1 (0.747); ROD1 (0.746); LDB19 (0.737); VPS20 (0.725); ALY2 (0.717); ART10 (0.715)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:416171-417799:+ | gene-YGL045W_AKU4011 | rna-NM_001180910.3_AKU4011 | cds-NP_011470.4_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000060.1:158328-159956:- | gene-YGL045W_BG1 | rna-NM_001180910.3_BG1 | cds-NP_011470.4_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:416991-418619:+ | gene-YGL045W_Bruggeman | rna-NM_001180910.3_Bruggeman | cds-NP_011470.4_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:415158-416785:+ | gene-YGL045W_CAT1 | rna-NM_001180910.3_CAT1 | cds-NP_011470.4_CAT1 | 99.3 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:417634-419262:+ | gene-YGL045W_CBS1585 | rna-NM_001180910.3_CBS1585 | cds-NP_011470.4_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:411776-413404:+ | gene-YGL045W_CBS436 | rna-NM_001180910.3_CBS436 | cds-NP_011470.4_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:410306-411934:+ | gene-YGL045W_CBS6412 | rna-NM_001180910.3_CBS6412 | cds-NP_011470.4_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:414351-415979:+ | gene-YGL045W_CBS6413 | rna-NM_001180910.3_CBS6413 | cds-NP_011470.4_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:413943-415571:+ | gene-YGL045W_CENPK1137D | rna-NM_001180910.3_CENPK1137D | cds-NP_011470.4_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:404552-406180:+ | gene-YGL045W_EthanolRed | rna-NM_001180910.3_EthanolRed | cds-NP_011470.4_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:407815-409443:+ | gene-YGL045W_FaliES1 | rna-NM_001180910.3_FaliES1 | cds-NP_011470.4_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000165.1:7389-9016:- | gene-YGL045W_JAY291 | rna-NM_001180910.3_JAY291 | cds-NP_011470.4_JAY291 | 99.6 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:413947-415575:+ | gene-YGL045W_MUCL30387 | rna-NM_001180910.3_MUCL30387 | cds-NP_011470.4_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:416991-418619:+ | gene-YGL045W_MUCL30388 | rna-NM_001180910.3_MUCL30388 | cds-NP_011470.4_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:413428-415056:+ | gene-YGL045W_MUCL39482 | rna-NM_001180910.3_MUCL39482 | cds-NP_011470.4_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:421850-423478:+ | gene-YGL045W_MUCL42920 | rna-NM_001180910.3_MUCL42920 | cds-NP_011470.4_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:414102-415730:+ | gene-YGL045W_NCIM3186 | rna-NM_001180910.3_NCIM3186 | cds-NP_011470.4_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:407555-409183:+ | gene-YGL045W_NCYC1407 | rna-NM_001180910.3_NCYC1407 | cds-NP_011470.4_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:410130-411758:+ | gene-YGL045W_PE2H3 | rna-NM_001180910.3_PE2H3 | cds-NP_011470.4_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:415180-416808:+ | gene-YGL045W_PE2H4 | rna-NM_001180910.3_PE2H4 | cds-NP_011470.4_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:414102-415730:+ | gene-YGL045W_S288C | rna-NM_001180910.3_S288C | cds-NP_011470.4_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000021.1:139898-141526:- | gene-YGL045W_SA1 | rna-NM_001180910.3_SA1 | cds-NP_011470.4_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:427179-428807:+ | gene-YGL045W_ThermosaccDry | rna-NM_001180910.3_ThermosaccDry | cds-NP_011470.4_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:517121-518749:+ | gene-YGL045W_VR1 | rna-NM_001180910.3_VR1 | cds-NP_011470.4_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:405756-407383:+ | gene-YGL045W_ZTW1 | rna-NM_001180910.3_ZTW1 | cds-NP_011470.4_ZTW1 | 99.6 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:415360-416988:+ | gene-YGL045W_Sparadoxus | rna-NM_001180910.3_Sparadoxus | cds-NP_011470.4_Sparadoxus | 89.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |