Gene name: RIM4
Reference locus (S288C): YHL024W
Gene biotype: protein_coding
Description: Meiotic activator RIM4; Putative RNA-binding protein; required for the expression of early and middle sporulation genes
Top 10 interactors (score): IME2 (0.946); IME1 (0.747); CLB3 (0.747); NDT80 (0.716); MUM2 (0.715); SSP2 (0.705); MRN1 (0.643); RAM2 (0.624); YDR510C-A (0.614); ACK1 (0.575); IDS2 (0.569); AMA1 (0.568); YOL057W (0.526); PRD1 (0.526); RSF1 (0.525); RSP5 (0.487); PUF3 (0.463); FUN19 (0.454); MIP6 (0.454); CLB1 (0.45)
Homologues (species, bitscore): TIAL1 (Homo sapiens, 51.6); Tial1 (Mus musculus, 51.6); tra2a (Danio rerio, 52.0); Rox8 (Drosophila melanogaster, 57.8); tiar-2 (Caenorhabditis elegans, 63.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:51600-53747:+ | gene-YHL024W_AKU4011 | rna-NM_001179104.1_AKU4011 | cds-NP_011839.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000180.1:23041-25179:- | gene-YHL024W_BG1 | rna-NM_001179104.1_BG1 | cds-NP_011839.1_BG1 | 98.9 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:58240-60381:+ | gene-YHL024W_Bruggeman | rna-NM_001179104.1_Bruggeman | cds-NP_011839.1_Bruggeman | 99.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:52474-54612:+ | gene-YHL024W_CAT1 | rna-NM_001179104.1_CAT1 | cds-NP_011839.1_CAT1 | 98.8 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:52201-54342:+ | gene-YHL024W_CBS1585 | rna-NM_001179104.1_CBS1585 | cds-NP_011839.1_CBS1585 | 99.7 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:44727-46865:+ | gene-YHL024W_CBS436 | rna-NM_001179104.1_CBS436 | cds-NP_011839.1_CBS436 | 98.9 | 99.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:52148-54292:+ | gene-YHL024W_CBS6412 | rna-NM_001179104.1_CBS6412 | cds-NP_011839.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:51607-53757:+ | gene-YHL024W_CBS6413 | rna-NM_001179104.1_CBS6413 | cds-NP_011839.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:49812-51953:+ | gene-YHL024W_CENPK1137D | rna-NM_001179104.1_CENPK1137D | cds-NP_011839.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:51831-53969:+ | gene-YHL024W_EthanolRed | rna-NM_001179104.1_EthanolRed | cds-NP_011839.1_EthanolRed | 99.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:52147-54285:+ | gene-YHL024W_FaliES1 | rna-NM_001179104.1_FaliES1 | cds-NP_011839.1_FaliES1 | 99.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000003.1:20836-22974:+ | gene-YHL024W_JAY291 | rna-NM_001179104.1_JAY291 | cds-NP_011839.1_JAY291 | 98.9 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:54078-56219:+ | gene-YHL024W_MUCL30387 | rna-NM_001179104.1_MUCL30387 | cds-NP_011839.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:55926-58067:+ | gene-YHL024W_MUCL30388 | rna-NM_001179104.1_MUCL30388 | cds-NP_011839.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:51192-53333:+ | gene-YHL024W_MUCL39482 | rna-NM_001179104.1_MUCL39482 | cds-NP_011839.1_MUCL39482 | 99.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:55159-57300:+ | gene-YHL024W_MUCL42920 | rna-NM_001179104.1_MUCL42920 | cds-NP_011839.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:56531-58672:+ | gene-YHL024W_NCIM3186 | rna-NM_001179104.1_NCIM3186 | cds-NP_011839.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:50674-52824:+ | gene-YHL024W_NCYC1407 | rna-NM_001179104.1_NCYC1407 | cds-NP_011839.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:46910-49048:+ | gene-YHL024W_PE2H3 | rna-NM_001179104.1_PE2H3 | cds-NP_011839.1_PE2H3 | 98.9 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:54351-56489:+ | gene-YHL024W_PE2H4 | rna-NM_001179104.1_PE2H4 | cds-NP_011839.1_PE2H4 | 98.9 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:56649-58790:+ | gene-YHL024W_S288C | rna-NM_001179104.1_S288C | cds-NP_011839.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:41011-43149:+ | gene-YHL024W_SA1 | rna-NM_001179104.1_SA1 | cds-NP_011839.1_SA1 | 98.8 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:53242-55380:+ | gene-YHL024W_ThermosaccDry | rna-NM_001179104.1_ThermosaccDry | cds-NP_011839.1_ThermosaccDry | 99.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:57953-60091:+ | gene-YHL024W_VR1 | rna-NM_001179104.1_VR1 | cds-NP_011839.1_VR1 | 99.2 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:44441-46582:+ | gene-YHL024W_ZTW1 | rna-NM_001179104.1_ZTW1 | cds-NP_011839.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:50767-52890:+ | gene-YHL024W_Sparadoxus | rna-NM_001179104.1_Sparadoxus | cds-NP_011839.1_Sparadoxus | 89.6 | 98.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |