Gene name: RIM21
Reference locus (S288C): YNL294C
Gene biotype: protein_coding
Description: pH-response regulator protein palH/RIM21; pH sensor molecule, component of the RIM101 pathway; has a role in cell wall construction and alkaline pH response; is glycosylated and phosphorylated; interacts with Dfg16p and Rim9p to form a pH-sensing complex; localization to the plasma membrane is dependent on Dfg16p and Rim9p; has similarity to A. nidulans PalH
Top 10 interactors (score): RIM8 (0.999); RIM9 (0.994); RIM101 (0.992); RIM20 (0.985); DFG16 (0.985); RIM13 (0.984); SNF7 (0.949); STP22 (0.87); YGR122W (0.811); BRO1 (0.687); KRE33 (0.671); VPS24 (0.665); RSP5 (0.647); VPS20 (0.639); FDC1 (0.618); TCB2 (0.616); VPS25 (0.574); USA1 (0.569); YOR389W (0.562); LEM3 (0.553)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:72472-74073:- | gene-YNL294C_AKU4011 | rna-NM_001183132.1_AKU4011 | cds-NP_014105.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000074.1:16571-18172:+ | gene-YNL294C_BG1 | rna-NM_001183132.1_BG1 | cds-NP_014105.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:81818-83419:- | gene-YNL294C_Bruggeman | rna-NM_001183132.1_Bruggeman | cds-NP_014105.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:84423-86024:- | gene-YNL294C_CAT1 | rna-NM_001183132.1_CAT1 | cds-NP_014105.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:72803-74404:- | gene-YNL294C_CBS1585 | rna-NM_001183132.1_CBS1585 | cds-NP_014105.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:73293-74894:- | gene-YNL294C_CBS436 | rna-NM_001183132.1_CBS436 | cds-NP_014105.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:69460-71061:- | gene-YNL294C_CBS6412 | rna-NM_001183132.1_CBS6412 | cds-NP_014105.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:69651-71252:- | gene-YNL294C_CBS6413 | rna-NM_001183132.1_CBS6413 | cds-NP_014105.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:72492-74093:- | gene-YNL294C_CENPK1137D | rna-NM_001183132.1_CENPK1137D | cds-NP_014105.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:69491-71092:- | gene-YNL294C_EthanolRed | rna-NM_001183132.1_EthanolRed | cds-NP_014105.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:70390-71991:- | gene-YNL294C_FaliES1 | rna-NM_001183132.1_FaliES1 | cds-NP_014105.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000171.1:16226-17828:+ | gene-YNL294C_JAY291 | rna-NM_001183132.1_JAY291 | cds-NP_014105.1_JAY291 | 99.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:82318-83919:- | gene-YNL294C_MUCL30387 | rna-NM_001183132.1_MUCL30387 | cds-NP_014105.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:75098-76699:- | gene-YNL294C_MUCL30388 | rna-NM_001183132.1_MUCL30388 | cds-NP_014105.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:70437-72038:- | gene-YNL294C_MUCL39482 | rna-NM_001183132.1_MUCL39482 | cds-NP_014105.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:72129-73730:- | gene-YNL294C_MUCL42920 | rna-NM_001183132.1_MUCL42920 | cds-NP_014105.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:78628-80229:- | gene-YNL294C_NCIM3186 | rna-NM_001183132.1_NCIM3186 | cds-NP_014105.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:71769-73370:- | gene-YNL294C_NCYC1407 | rna-NM_001183132.1_NCYC1407 | cds-NP_014105.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:68968-70569:- | gene-YNL294C_PE2H3 | rna-NM_001183132.1_PE2H3 | cds-NP_014105.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:68356-69957:- | gene-YNL294C_PE2H4 | rna-NM_001183132.1_PE2H4 | cds-NP_014105.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:78659-80260:- | gene-YNL294C_S288C | rna-NM_001183132.1_S288C | cds-NP_014105.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000052.1:16957-18558:+ | gene-YNL294C_SA1 | rna-NM_001183132.1_SA1 | cds-NP_014105.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:71247-72848:- | gene-YNL294C_ThermosaccDry | rna-NM_001183132.1_ThermosaccDry | cds-NP_014105.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:83788-85389:- | gene-YNL294C_VR1 | rna-NM_001183132.1_VR1 | cds-NP_014105.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000029.1:62458-64059:- | gene-YNL294C_ZTW1 | rna-NM_001183132.1_ZTW1 | cds-NP_014105.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:80521-82122:- | gene-YNL294C_Sparadoxus | rna-NM_001183132.1_Sparadoxus | cds-NP_014105.1_Sparadoxus | 88.9 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |