Gene name: RIM20
Reference locus (S288C): YOR275C
Gene biotype: protein_coding
Description: Programmed cell death 6-interacting protein; pH-response regulator protein palA/RIM20; Protein involved in proteolytic activation of Rim101p; part of response to alkaline pH; PalA/AIP1/Alix family member; interaction with the ESCRT-III subunit Snf7p suggests a relationship between pH response and multivesicular body formation
Top 10 interactors (score): SNF7 (0.999); RIM101 (0.998); RIM13 (0.994); RIM21 (0.985); RIM8 (0.984); PEF1 (0.973); STP22 (0.964); RIM9 (0.948); VPS36 (0.946); VPS25 (0.935); DFG16 (0.935); SNF8 (0.931); YGR122W (0.929); VPS20 (0.927); VPS4 (0.905); VPS24 (0.885); FUR4 (0.857); VPS27 (0.82); VPS28 (0.815); MVB12 (0.812)
Homologues (species, bitscore): PDCD6IP (Homo sapiens, 159.5); Pdcd6ip (Mus musculus, 157.1); pdcd6ip (Danio rerio, 162.2); pdcd6ip (Xenopus tropicalis, 164.9); ALiX (Drosophila melanogaster, 152.9); alx-1 (Caenorhabditis elegans, 153.3); AT1G15130 (Arabidopsis thaliana, 143.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:829894-831879:- | gene-YOR275C_AKU4011 | rna-NM_001183694.1_AKU4011 | cds-NP_014918.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:231858-233843:- | gene-YOR275C_BG1 | rna-NM_001183694.1_BG1 | cds-NP_014918.1_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:815328-817313:- | gene-YOR275C_Bruggeman | rna-NM_001183694.1_Bruggeman | cds-NP_014918.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:815999-817984:- | gene-YOR275C_CAT1 | rna-NM_001183694.1_CAT1 | cds-NP_014918.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:812912-814897:- | gene-YOR275C_CBS1585 | rna-NM_001183694.1_CBS1585 | cds-NP_014918.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:811560-813545:- | gene-YOR275C_CBS436 | rna-NM_001183694.1_CBS436 | cds-NP_014918.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:809765-811750:- | gene-YOR275C_CBS6412 | rna-NM_001183694.1_CBS6412 | cds-NP_014918.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:818623-820608:- | gene-YOR275C_CBS6413 | rna-NM_001183694.1_CBS6413 | cds-NP_014918.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:838854-840839:- | gene-YOR275C_CENPK1137D | rna-NM_001183694.1_CENPK1137D | cds-NP_014918.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:806021-808006:- | gene-YOR275C_EthanolRed | rna-NM_001183694.1_EthanolRed | cds-NP_014918.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:811420-813405:- | gene-YOR275C_FaliES1 | rna-NM_001183694.1_FaliES1 | cds-NP_014918.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000381.1:13510-15495:+ | gene-YOR275C_JAY291 | rna-NM_001183694.1_JAY291 | cds-NP_014918.1_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:819565-821550:- | gene-YOR275C_MUCL30387 | rna-NM_001183694.1_MUCL30387 | cds-NP_014918.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:827542-829527:- | gene-YOR275C_MUCL30388 | rna-NM_001183694.1_MUCL30388 | cds-NP_014918.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:820258-822243:- | gene-YOR275C_MUCL39482 | rna-NM_001183694.1_MUCL39482 | cds-NP_014918.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:829744-831729:- | gene-YOR275C_MUCL42920 | rna-NM_001183694.1_MUCL42920 | cds-NP_014918.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:838973-840958:- | gene-YOR275C_NCIM3186 | rna-NM_001183694.1_NCIM3186 | cds-NP_014918.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:820463-822448:- | gene-YOR275C_NCYC1407 | rna-NM_001183694.1_NCYC1407 | cds-NP_014918.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:819540-821525:- | gene-YOR275C_PE2H3 | rna-NM_001183694.1_PE2H3 | cds-NP_014918.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:829917-831902:- | gene-YOR275C_PE2H4 | rna-NM_001183694.1_PE2H4 | cds-NP_014918.1_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:839084-841069:- | gene-YOR275C_S288C | rna-NM_001183694.1_S288C | cds-NP_014918.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000006.1:249101-251086:- | gene-YOR275C_SA1 | rna-NM_001183694.1_SA1 | cds-NP_014918.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:810603-812588:- | gene-YOR275C_ThermosaccDry | rna-NM_001183694.1_ThermosaccDry | cds-NP_014918.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:873980-875965:- | gene-YOR275C_VR1 | rna-NM_001183694.1_VR1 | cds-NP_014918.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:543491-545476:- | gene-YOR275C_ZTW1 | rna-NM_001183694.1_ZTW1 | cds-NP_014918.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:816239-818218:- | gene-YOR275C_Sparadoxus | rna-NM_001183694.1_Sparadoxus | cds-NP_014918.1_Sparadoxus | 86.6 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |