Gene name: RIM13
Reference locus (S288C): YMR154C
Gene biotype: protein_coding
Description: Calpain-like cysteine protease; involved in proteolytic activation of Rim101p in response to alkaline pH; localizes to punctate structures in alkaline conditions and in vps4 mutant; has similarity to A. nidulans palB
Top 10 interactors (score): RIM101 (0.998); SNF7 (0.996); RIM20 (0.994); PEF1 (0.994); RIM8 (0.986); RIM21 (0.984); RIM9 (0.917); DFG16 (0.915); IST1 (0.892); YGR122W (0.89); VPS24 (0.842); BRO1 (0.814); NRG1 (0.803); STP22 (0.773); MCA1 (0.768); VPS20 (0.759); DID2 (0.706); MDS3 (0.68); DID4 (0.673); VPS36 (0.606)
Homologues (species, bitscore): CAPN7 (Homo sapiens, 66.6); Capn7 (Mus musculus, 67.0); capn7 (Danio rerio, 60.5); capn7 (Xenopus tropicalis, 66.6); clp-2 (Caenorhabditis elegans, 69.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:605503-607686:- | gene-YMR154C_AKU4011 | rna-NM_001182657.1_AKU4011 | cds-NP_013875.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000068.1:64856-67039:+ | gene-YMR154C_BG1 | rna-NM_001182657.1_BG1 | cds-NP_013875.1_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:548671-550854:- | gene-YMR154C_Bruggeman | rna-NM_001182657.1_Bruggeman | cds-NP_013875.1_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:550891-553074:- | gene-YMR154C_CAT1 | rna-NM_001182657.1_CAT1 | cds-NP_013875.1_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:538427-540610:- | gene-YMR154C_CBS1585 | rna-NM_001182657.1_CBS1585 | cds-NP_013875.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:542300-544483:- | gene-YMR154C_CBS436 | rna-NM_001182657.1_CBS436 | cds-NP_013875.1_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:651045-653228:- | gene-YMR154C_CBS6412 | rna-NM_001182657.1_CBS6412 | cds-NP_013875.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:536978-539161:- | gene-YMR154C_CBS6413 | rna-NM_001182657.1_CBS6413 | cds-NP_013875.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:560509-562692:- | gene-YMR154C_CENPK1137D | rna-NM_001182657.1_CENPK1137D | cds-NP_013875.1_CENPK1137D | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:536593-538776:- | gene-YMR154C_EthanolRed | rna-NM_001182657.1_EthanolRed | cds-NP_013875.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:543592-545775:- | gene-YMR154C_FaliES1 | rna-NM_001182657.1_FaliES1 | cds-NP_013875.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000115.1:15439-17622:- | gene-YMR154C_JAY291 | rna-NM_001182657.1_JAY291 | cds-NP_013875.1_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:543396-545579:- | gene-YMR154C_MUCL30387 | rna-NM_001182657.1_MUCL30387 | cds-NP_013875.1_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:548920-551103:- | gene-YMR154C_MUCL30388 | rna-NM_001182657.1_MUCL30388 | cds-NP_013875.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:539114-541297:- | gene-YMR154C_MUCL39482 | rna-NM_001182657.1_MUCL39482 | cds-NP_013875.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:545405-547588:- | gene-YMR154C_MUCL42920 | rna-NM_001182657.1_MUCL42920 | cds-NP_013875.1_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:565953-568136:- | gene-YMR154C_NCIM3186 | rna-NM_001182657.1_NCIM3186 | cds-NP_013875.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:538817-541000:- | gene-YMR154C_NCYC1407 | rna-NM_001182657.1_NCYC1407 | cds-NP_013875.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:549193-551376:- | gene-YMR154C_PE2H3 | rna-NM_001182657.1_PE2H3 | cds-NP_013875.1_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:549651-551834:- | gene-YMR154C_PE2H4 | rna-NM_001182657.1_PE2H4 | cds-NP_013875.1_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:565999-568182:- | gene-YMR154C_S288C | rna-NM_001182657.1_S288C | cds-NP_013875.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000048.1:3094-5277:+ | gene-YMR154C_SA1 | rna-NM_001182657.1_SA1 | cds-NP_013875.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:539240-541423:- | gene-YMR154C_ThermosaccDry | rna-NM_001182657.1_ThermosaccDry | cds-NP_013875.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:551706-553889:- | gene-YMR154C_VR1 | rna-NM_001182657.1_VR1 | cds-NP_013875.1_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:514134-516317:- | gene-YMR154C_ZTW1 | rna-NM_001182657.1_ZTW1 | cds-NP_013875.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:550542-552724:- | gene-YMR154C_Sparadoxus | rna-NM_001182657.1_Sparadoxus | cds-NP_013875.1_Sparadoxus | 86.8 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |