Gene name: RIM101
Reference locus (S288C): YHL027W
Gene biotype: protein_coding
Description: pH-response transcription factor pacC/RIM101; Cys2His2 zinc-finger transcriptional repressor; involved in alkaline responsive gene repression as part of adaptation to alkaline conditions; involved in cell wall assembly; required for alkaline pH-stimulated haploid invasive growth and sporulation; activated by alkaline-dependent proteolytic processing which results in removal of the C-terminal tail; similar to A. nidulans PacC; Belongs to the pacC/RIM101 family
Top 10 interactors (score): RIM13 (0.998); RIM20 (0.998); RIM8 (0.997); RIM21 (0.992); SNF7 (0.99); NRG1 (0.982); RIM9 (0.952); BRO1 (0.93); HOG1 (0.929); YGR122W (0.921); DFG16 (0.909); CRZ1 (0.906); VPS25 (0.897); SMP1 (0.894); STP22 (0.893); SLT2 (0.888); DIT2 (0.861); VPS20 (0.857); TUP1 (0.837); TPK1 (0.836)
Homologues (species, bitscore): EGR1 (Homo sapiens, 69.3); Egr1 (Mus musculus, 69.7); KLF8 (Danio rerio, 65.5); egr1 (Xenopus tropicalis, 65.9); Bteb2 (Drosophila melanogaster, 65.1); egrh-2 (Caenorhabditis elegans, 63.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:45992-47884:+ | gene-YHL027W_AKU4011 | rna-NM_001179107.1_AKU4011 | cds-NP_011836.1_AKU4011 | 98.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000180.1:28894-30783:- | gene-YHL027W_BG1 | rna-NM_001179107.1_BG1 | cds-NP_011836.1_BG1 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:52649-54526:+ | gene-YHL027W_Bruggeman | rna-NM_001179107.1_Bruggeman | cds-NP_011836.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:46865-48754:+ | gene-YHL027W_CAT1 | rna-NM_001179107.1_CAT1 | cds-NP_011836.1_CAT1 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:46593-48485:+ | gene-YHL027W_CBS1585 | rna-NM_001179107.1_CBS1585 | cds-NP_011836.1_CBS1585 | 98.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:39135-41012:+ | gene-YHL027W_CBS436 | rna-NM_001179107.1_CBS436 | cds-NP_011836.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:46543-48432:+ | gene-YHL027W_CBS6412 | rna-NM_001179107.1_CBS6412 | cds-NP_011836.1_CBS6412 | 98.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:46006-47895:+ | gene-YHL027W_CBS6413 | rna-NM_001179107.1_CBS6413 | cds-NP_011836.1_CBS6413 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:44271-46151:+ | gene-YHL027W_CENPK1137D | rna-NM_001179107.1_CENPK1137D | cds-NP_011836.1_CENPK1137D | 97.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:46224-48116:+ | gene-YHL027W_EthanolRed | rna-NM_001179107.1_EthanolRed | cds-NP_011836.1_EthanolRed | 98.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:46540-48432:+ | gene-YHL027W_FaliES1 | rna-NM_001179107.1_FaliES1 | cds-NP_011836.1_FaliES1 | 98.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000003.1:15232-17121:+ | gene-YHL027W_JAY291 | rna-NM_001179107.1_JAY291 | cds-NP_011836.1_JAY291 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:48488-50365:+ | gene-YHL027W_MUCL30387 | rna-NM_001179107.1_MUCL30387 | cds-NP_011836.1_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:50325-52202:+ | gene-YHL027W_MUCL30388 | rna-NM_001179107.1_MUCL30388 | cds-NP_011836.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:45584-47476:+ | gene-YHL027W_MUCL39482 | rna-NM_001179107.1_MUCL39482 | cds-NP_011836.1_MUCL39482 | 98.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:49569-51446:+ | gene-YHL027W_MUCL42920 | rna-NM_001179107.1_MUCL42920 | cds-NP_011836.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:50993-52870:+ | gene-YHL027W_NCIM3186 | rna-NM_001179107.1_NCIM3186 | cds-NP_011836.1_NCIM3186 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:45069-46958:+ | gene-YHL027W_NCYC1407 | rna-NM_001179107.1_NCYC1407 | cds-NP_011836.1_NCYC1407 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:41306-43195:+ | gene-YHL027W_PE2H3 | rna-NM_001179107.1_PE2H3 | cds-NP_011836.1_PE2H3 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:48747-50636:+ | gene-YHL027W_PE2H4 | rna-NM_001179107.1_PE2H4 | cds-NP_011836.1_PE2H4 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:51111-52988:+ | gene-YHL027W_S288C | rna-NM_001179107.1_S288C | cds-NP_011836.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:35404-37296:+ | gene-YHL027W_SA1 | rna-NM_001179107.1_SA1 | cds-NP_011836.1_SA1 | 97.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:47635-49527:+ | gene-YHL027W_ThermosaccDry | rna-NM_001179107.1_ThermosaccDry | cds-NP_011836.1_ThermosaccDry | 98.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:52346-54235:+ | gene-YHL027W_VR1 | rna-NM_001179107.1_VR1 | cds-NP_011836.1_VR1 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:38852-40729:+ | gene-YHL027W_ZTW1 | rna-NM_001179107.1_ZTW1 | cds-NP_011836.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:45153-47048:+ | gene-YHL027W_Sparadoxus | rna-NM_001179107.1_Sparadoxus | cds-NP_011836.1_Sparadoxus | 86.5 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |