Gene name: RIM1
Reference locus (S288C): YCR028C-A
Gene biotype: protein_coding
Description: ssDNA-binding protein essential for mitochondrial genome maintenance; involved in mitochondrial DNA replication; stimulates utilization by Mip1p DNA polymerase of RNA primers synthesized by Rpo41p
Top 10 interactors (score): MHR1 (0.819); MTF1 (0.748); SPS1 (0.746); MSH6 (0.743); RAD16 (0.723); ELP4 (0.71); RPO41 (0.692); BOI2 (0.691); SUB1 (0.625); MMS1 (0.619); RNH1 (0.616); MPH1 (0.586); SGV1 (0.586); RIM20 (0.574); RRM3 (0.526); ARG5,6 (0.487); SOK1 (0.481); MGM101 (0.48); BUR2 (0.465); RAD52 (0.464)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:166415-166905:- | gene-YCR028C-A_AKU4011 | rna-NM_001184315.1_AKU4011 | cds-NP_009958.2_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000067.1:20909-21399:- | gene-YCR028C-A_BG1 | rna-NM_001184315.1_BG1 | cds-NP_009958.2_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:162703-163193:- | gene-YCR028C-A_Bruggeman | rna-NM_001184315.1_Bruggeman | cds-NP_009958.2_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:173846-174336:- | gene-YCR028C-A_CAT1 | rna-NM_001184315.1_CAT1 | cds-NP_009958.2_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:161176-161666:- | gene-YCR028C-A_CBS1585 | rna-NM_001184315.1_CBS1585 | cds-NP_009958.2_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:172822-173312:- | gene-YCR028C-A_CBS436 | rna-NM_001184315.1_CBS436 | cds-NP_009958.2_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:155029-155519:- | gene-YCR028C-A_CBS6412 | rna-NM_001184315.1_CBS6412 | cds-NP_009958.2_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:167353-167843:- | gene-YCR028C-A_CBS6413 | rna-NM_001184315.1_CBS6413 | cds-NP_009958.2_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:172291-172781:- | gene-YCR028C-A_CENPK1137D | rna-NM_001184315.1_CENPK1137D | cds-NP_009958.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:164176-164666:- | gene-YCR028C-A_EthanolRed | rna-NM_001184315.1_EthanolRed | cds-NP_009958.2_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:167292-167782:- | gene-YCR028C-A_FaliES1 | rna-NM_001184315.1_FaliES1 | cds-NP_009958.2_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000102.1:3570-4060:- | gene-YCR028C-A_JAY291 | rna-NM_001184315.1_JAY291 | cds-NP_009958.2_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:159942-160432:- | gene-YCR028C-A_MUCL30387 | rna-NM_001184315.1_MUCL30387 | cds-NP_009958.2_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:159730-160220:- | gene-YCR028C-A_MUCL30388 | rna-NM_001184315.1_MUCL30388 | cds-NP_009958.2_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:167500-167990:- | gene-YCR028C-A_MUCL39482 | rna-NM_001184315.1_MUCL39482 | cds-NP_009958.2_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:165292-165782:- | gene-YCR028C-A_MUCL42920 | rna-NM_001184315.1_MUCL42920 | cds-NP_009958.2_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:172582-173072:- | gene-YCR028C-A_NCIM3186 | rna-NM_001184315.1_NCIM3186 | cds-NP_009958.2_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:169263-169753:- | gene-YCR028C-A_NCYC1407 | rna-NM_001184315.1_NCYC1407 | cds-NP_009958.2_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:178308-178798:- | gene-YCR028C-A_PE2H3 | rna-NM_001184315.1_PE2H3 | cds-NP_009958.2_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:172930-173420:- | gene-YCR028C-A_PE2H4 | rna-NM_001184315.1_PE2H4 | cds-NP_009958.2_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:172950-173440:- | gene-YCR028C-A_S288C | rna-NM_001184315.1_S288C | cds-NP_009958.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000083.1:20457-20947:- | gene-YCR028C-A_SA1 | rna-NM_001184315.1_SA1 | cds-NP_009958.2_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:168068-168558:- | gene-YCR028C-A_ThermosaccDry | rna-NM_001184315.1_ThermosaccDry | cds-NP_009958.2_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:179084-179574:- | gene-YCR028C-A_VR1 | rna-NM_001184315.1_VR1 | cds-NP_009958.2_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:166327-166816:- | gene-YCR028C-A_ZTW1 | rna-NM_001184315.1_ZTW1 | cds-NP_009958.2_ZTW1 | 99.5 | 99.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:200432-200922:- | gene-YCR028C-A_Sparadoxus | rna-NM_001184315.1_Sparadoxus | cds-NP_009958.2_Sparadoxus | 94.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |