Gene name: RIF2
Reference locus (S288C): YLR453C
Gene biotype: protein_coding
Description: Protein that binds to the Rap1p C-terminus; acts synergistically with Rif1p to help control telomere length and establish telomeric silencing; deletion results in telomere elongation; RIF2 has a paralog, ORC4, that arose from the whole genome duplication
Top 10 interactors (score): RAP1 (0.999); RIF1 (0.998); CDC13 (0.99); TEL1 (0.962); YKU70 (0.96); TEN1 (0.955); STN1 (0.934); SIR4 (0.922); EST1 (0.896); SIR3 (0.891); EXO1 (0.856); YKU80 (0.849); PIF1 (0.849); TBF1 (0.832); RAD50 (0.82); NSE3 (0.78); SGS1 (0.775); EST3 (0.767); MEC1 (0.746); SIR2 (0.731)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:980089-981276:- | gene-YLR453C_AKU4011 | rna-NM_001182341.3_AKU4011 | cds-NP_013558.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000048.1:212527-213714:- | gene-YLR453C_BG1 | rna-NM_001182341.3_BG1 | cds-NP_013558.3_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:1018385-1019572:- | gene-YLR453C_Bruggeman | rna-NM_001182341.3_Bruggeman | cds-NP_013558.3_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:1014392-1015579:- | gene-YLR453C_CAT1 | rna-NM_001182341.3_CAT1 | cds-NP_013558.3_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:1015679-1016866:- | gene-YLR453C_CBS1585 | rna-NM_001182341.3_CBS1585 | cds-NP_013558.3_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:1005006-1006193:- | gene-YLR453C_CBS436 | rna-NM_001182341.3_CBS436 | cds-NP_013558.3_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:1051708-1052895:- | gene-YLR453C_CBS6412 | rna-NM_001182341.3_CBS6412 | cds-NP_013558.3_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:1016449-1017636:- | gene-YLR453C_CBS6413 | rna-NM_001182341.3_CBS6413 | cds-NP_013558.3_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:1026425-1027612:- | gene-YLR453C_CENPK1137D | rna-NM_001182341.3_CENPK1137D | cds-NP_013558.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:973105-974292:- | gene-YLR453C_EthanolRed | rna-NM_001182341.3_EthanolRed | cds-NP_013558.3_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:1008376-1009563:- | gene-YLR453C_FaliES1 | rna-NM_001182341.3_FaliES1 | cds-NP_013558.3_FaliES1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000194.1:9112-10299:+ | gene-YLR453C_JAY291 | rna-NM_001182341.3_JAY291 | cds-NP_013558.3_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:1017242-1018429:- | gene-YLR453C_MUCL30387 | rna-NM_001182341.3_MUCL30387 | cds-NP_013558.3_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:1027075-1028262:- | gene-YLR453C_MUCL30388 | rna-NM_001182341.3_MUCL30388 | cds-NP_013558.3_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:1016913-1018100:- | gene-YLR453C_MUCL39482 | rna-NM_001182341.3_MUCL39482 | cds-NP_013558.3_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:1017366-1018553:- | gene-YLR453C_MUCL42920 | rna-NM_001182341.3_MUCL42920 | cds-NP_013558.3_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:1041773-1042960:- | gene-YLR453C_NCIM3186 | rna-NM_001182341.3_NCIM3186 | cds-NP_013558.3_NCIM3186 | 95.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:1026350-1027537:- | gene-YLR453C_NCYC1407 | rna-NM_001182341.3_NCYC1407 | cds-NP_013558.3_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:1012796-1013983:- | gene-YLR453C_PE2H3 | rna-NM_001182341.3_PE2H3 | cds-NP_013558.3_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:1012540-1013727:- | gene-YLR453C_PE2H4 | rna-NM_001182341.3_PE2H4 | cds-NP_013558.3_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:1041799-1042986:- | gene-YLR453C_S288C | rna-NM_001182341.3_S288C | cds-NP_013558.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:16875-18062:+ | gene-YLR453C_SA1 | rna-NM_001182341.3_SA1 | cds-NP_013558.3_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:1011454-1012641:- | gene-YLR453C_ThermosaccDry | rna-NM_001182341.3_ThermosaccDry | cds-NP_013558.3_ThermosaccDry | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:1017877-1019064:- | gene-YLR453C_VR1 | rna-NM_001182341.3_VR1 | cds-NP_013558.3_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:341707-342894:- | gene-YLR453C_ZTW1 | rna-NM_001182341.3_ZTW1 | cds-NP_013558.3_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:990655-991842:- | gene-YLR453C_Sparadoxus | rna-NM_001182341.3_Sparadoxus | cds-NP_013558.3_Sparadoxus | 82.3 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |